Strain identifier

BacDive ID: 131080

Type strain: Yes

Species: Pseudoalteromonas elyakovii

Strain Designation: 40MC

Strain history: CIP <- 1997, E. Ivanova, Sci. Acad., Vladivostok, Russia <- V.V. Mikhailov: strain 40MC

NCBI tax ID(s): 81037 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 22372

BacDive-ID: 131080

DSM-Number: 12747

keywords: genome sequence, 16S sequence, Bacteria, aerobe, psychrophilic, motile, plant pathogen

description: Pseudoalteromonas elyakovii 40MC is an aerobe, psychrophilic, motile plant pathogen that was isolated from mussel .

NCBI tax id

  • NCBI tax id: 81037
  • Matching level: species

strain history

@refhistory
22372<- L. A. Romanenko, Inst. Marine Biol. FEB RAS, Vladivostok; KMM 162 <- V. V. Mikhailov, Inst. Marine Biol. FEB RAS, Vladivostok
119021CIP <- 1997, E. Ivanova, Sci. Acad., Vladivostok, Russia <- V.V. Mikhailov: strain 40MC

doi: 10.13145/bacdive131080.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Pseudoalteromonadaceae
  • genus: Pseudoalteromonas
  • species: Pseudoalteromonas elyakovii
  • full scientific name: Pseudoalteromonas elyakovii (Ivanova et al. 1997) Sawabe et al. 2000

  • synonyms

    • @ref: 20215
    • synonym: Alteromonas elyakovii

@ref: 22372

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas elyakovii

full scientific name: Pseudoalteromonas elyakovii (Ivanova et al. 1997) Sawabe et al. 2000

strain designation: 40MC

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.568
6948099.992negative
119021yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22372BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
42036Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
119021CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
22372positivegrowth20psychrophilic
42036positivegrowth25mesophilic
56346positivegrowth30mesophilic
119021positivegrowth5-30
119021nogrowth37mesophilic
119021nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 56346
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.989

halophily

@refsaltgrowthtested relationconcentration
119021NaClpositivegrowth2-8 %
119021NaClnogrowth0 %
119021NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1190214853esculin+hydrolysis
11902117632nitrate-reduction
11902116301nitrite-reduction

metabolite production

  • @ref: 119021
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
119021oxidase+
119021beta-galactosidase+3.2.1.23
119021alcohol dehydrogenase-1.1.1.1
119021gelatinase-
119021amylase+
119021caseinase+3.4.21.50
119021catalase+1.11.1.6
119021tween esterase+
119021lecithinase+
119021lipase+
119021lysine decarboxylase-4.1.1.18
119021ornithine decarboxylase-4.1.1.17
119021tryptophan deaminase-
119021urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    56346C12:01.512
    56346C13:00.613
    56346C14:00.414
    56346C15:06.515
    56346C16:013.516
    56346C17:06.117
    56346C18:00.618
    56346C10:0 3OH0.511.423
    56346C11:0 3OH112.441
    56346C12:0 3OH3.313.455
    56346C12:0 ISO 3OH0.613.098
    56346C13:0 3OH/C15:1 i I/H114.469
    56346C13:0 ISO 2OH0.613.814
    56346C14:0 ISO 3OH0.515.117
    56346C15:0 ISO 3OH2.416.135
    56346C15:1 ω6c1.514.856
    56346C15:1 ω8c614.792
    56346C16:0 iso1.215.626
    56346C16:1 ω7c23.715.819
    56346C16:1 ω7c/C15:0 ISO 2OH6.615.85
    56346C16:1 ω9c0.815.774
    56346C17:0 anteiso0.516.722
    56346C17:0 iso0.716.629
    56346C17:1 ω7c3.416.818
    56346C17:1 ω8c1116.792
    56346C18:1 ω7c /12t/9t2.417.824
    56346C18:1 ω9c0.417.769
    56346Unidentified0.812.78
    56346Unidentified1.416.299
    56346unknown 11.7980.611.798
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119021-+-+-+----++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119021---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentisolation date
22372mussel (Crenomytilus grayanus)Crenomytilus grayanusPeter the Great BayRussiaRUSAsia
56346Far-East mussel,Crenomytilus grayanusTroitsa Bay (Peter the Great Bay)RussiaRUSAsia
119021Mussel, Crenomytilus grayanusSea of Japan1985

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Mollusca

taxonmaps

  • @ref: 69479
  • File name: preview.99_1002.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_122;97_129;98_145;99_1002&stattab=map
  • Last taxonomy: Pseudoalteromonas
  • 16S sequence: AF082562
  • Sequence Identity:
  • Total samples: 3222
  • soil counts: 24
  • aquatic counts: 2792
  • animal counts: 384
  • plant counts: 22

Safety information

risk assessment

@refpathogenicity plantbiosafety levelbiosafety level comment
22372yes1Risk group (German classification)
1190211Risk group (French classification)

Sequence information

16S sequences

  • @ref: 22372
  • description: Alteromonas elyakovii 16S ribosomal RNA gene, partial sequence
  • accession: AF082562
  • length: 1494
  • database: ena
  • NCBI tax ID: 81037

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudoalteromonas elyakovii ATCC 70051981037.3wgspatric81037
66792Pseudoalteromonas elyakovii ATCC 7005192627853893draftimg81037

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes92.102no
flagellatedyes94.41no
gram-positiveno99.127no
anaerobicno96.196yes
halophileno51.075no
spore-formingno94.43no
glucose-utilyes90.407no
aerobicyes86.85yes
glucose-fermentno72.335no
thermophileno99.662yes

External links

@ref: 22372

culture collection no.: DSM 12747, ATCC 700519, VKPM B 3905, CCUG 44496, KMM 162, CIP 105338, VKPM B3905

straininfo link

  • @ref: 89543
  • straininfo: 10038

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10826813Assignment of Alteromonas elyakovii KMM 162T and five strains isolated from spot-wounded fronds of Laminaria japonica to Pseudoalteromonas elyakovii comb. nov. and the extended description of the species.Sawabe T, Tanaka R, Iqbal MM, Tajima K, Ezura Y, Ivanova EP, Christen RInt J Syst Evol Microbiol10.1099/00207713-50-1-2652000Alteromonas/*classification/cytology/genetics/physiology, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Gammaproteobacteria/*classification/cytology/genetics/physiology, Laminaria/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Water MicrobiologyGenetics
Phylogeny18768597Pseudoalteromonas arctica sp. nov., an aerobic, psychrotolerant, marine bacterium isolated from Spitzbergen.Al Khudary R, Stosser NI, Qoura F, Antranikian GInt J Syst Evol Microbiol10.1099/ijs.0.64963-02008Anaerobiosis, Arctic Regions, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Carboxylic Acids/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella, Genes, rRNA, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pseudoalteromonas/*classification/genetics/*isolation & purification/physiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, TemperatureMetabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22372Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-12747Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12747)
42036Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17347
56346Curators of the CCUGhttps://www.ccug.se/strain?id=44496Culture Collection University of Gothenburg (CCUG) (CCUG 44496)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89543Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID10038.1
119021Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105338Collection of Institut Pasteur (CIP 105338)