Strain identifier
BacDive ID: 131065
Type strain: 
Species: Staphylococcus pasteuri
Strain Designation: SP2-5
Strain history: <- European Space Agency, Noordwijk, Netherlands <- P. Rettberg, Deutsches Zentrum für Luft- und Raumfahrt, Köln; SP2-5
NCBI tax ID(s): 45972 (species)
General
@ref: 22357
BacDive-ID: 131065
DSM-Number: 100611
keywords: genome sequence, Bacteria, mesophilic
description: Staphylococcus pasteuri SP2-5 is a mesophilic bacterium that was isolated from cleanroom facility, TAS.
NCBI tax id
- NCBI tax id: 45972
- Matching level: species
strain history
- @ref: 22357
- history: <- European Space Agency, Noordwijk, Netherlands <- P. Rettberg, Deutsches Zentrum für Luft- und Raumfahrt, Köln; SP2-5
doi: 10.13145/bacdive131065.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus pasteuri
- full scientific name: Staphylococcus pasteuri Chesneau et al. 1993
@ref: 22357
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus pasteuri
full scientific name: Staphylococcus pasteuri Chesneau et al. 1993
strain designation: SP2-5
type strain: no
Culture and growth conditions
culture medium
- @ref: 22357
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 22357
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22357
- sample type: cleanroom facility, TAS
- geographic location: Torino
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Built environment
- Cat3: #Clean room
Safety information
risk assessment
- @ref: 22357
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Staphylococcus pasteuri strain FDAARGOS_1206
- accession: 45972.88
- assembly level: wgs
- database: patric
- NCBI tax ID: 45972
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | yes | 91.397 | no |
| anaerobic | no | 99.272 | no |
| halophile | yes | 96.52 | no |
| spore-forming | no | 93.352 | no |
| glucose-util | yes | 90.043 | no |
| aerobic | yes | 88.091 | no |
| flagellated | no | 94.5 | no |
| motile | no | 90.697 | no |
| thermophile | no | 99.829 | yes |
| glucose-ferment | yes | 83.872 | no |
External links
@ref: 22357
culture collection no.: DSM 100611
straininfo link
- @ref: 89529
- straininfo: 398386
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22357 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100611 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100611) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89529 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398386.1 |