Strain identifier
BacDive ID: 131031
Type strain: 
Species: Zymomonas mobilis
Strain history: <- O. D. Delgado, PROIMI, Tucuman, Argentina; Proimi A1 <- E. Rodriguez
NCBI tax ID(s): 542 (species)
version 8.1 (current version)
General
@ref: 22323
BacDive-ID: 131031
DSM-Number: 14017
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Zymomonas mobilis DSM 14017 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from sugar cane juice.
NCBI tax id
- NCBI tax id: 542
- Matching level: species
strain history
- @ref: 22323
- history: <- O. D. Delgado, PROIMI, Tucuman, Argentina; Proimi A1 <- E. Rodriguez
doi: 10.13145/bacdive131031.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Zymomonadaceae
- genus: Zymomonas
- species: Zymomonas mobilis
- full scientific name: Zymomonas mobilis corrig. (Lindner 1928) Kluyver and van Niel 1936 (Approved Lists 1980)
synonyms
@ref synonym 20215 Zymomonas mobile 20215 Thermobacterium mobile
@ref: 22323
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Pseudomonadales
family: Zymomonadaceae
genus: Zymomonas
species: Zymomonas mobilis
full scientific name: Zymomonas mobilis (Lindner 1928) Kluyver and van Niel 1936
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.991
Culture and growth conditions
culture medium
- @ref: 22323
- name: ZYMOMONAS MEDIUM (DSMZ Medium 10)
- growth: yes
- link: https://mediadive.dsmz.de/medium/10
- composition: Name: ZYMOMONAS MEDIUM (DSMZ Medium 10) Composition: Glucose 20.0 g/l Agar 15.0 g/l Yeast extract 10.0 g/l Bacto peptone 10.0 g/l Distilled water
culture temp
- @ref: 22323
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 22323
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.986 |
Isolation, sampling and environmental information
isolation
- @ref: 22323
- sample type: sugar cane juice
- geographic location: Tucumàn
- country: Argentina
- origin.country: ARG
- continent: Middle and South America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body Product | #Plant | #Juice (natural) |
taxonmaps
- @ref: 69479
- File name: preview.99_337.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_92;96_237;97_259;98_288;99_337&stattab=map
- Last taxonomy: Zymomonas mobilis subclade
- 16S sequence: AF281033
- Sequence Identity:
- Total samples: 2581
- soil counts: 1083
- aquatic counts: 916
- animal counts: 421
- plant counts: 161
Safety information
risk assessment
- @ref: 22323
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22323
- description: Zymomonas mobilis 16S ribosomal RNA gene, partial sequence
- accession: AF281033
- length: 1452
- database: ena
- NCBI tax ID: 542
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Zymomonas mobilis strain DSM 14017 | 542.20 | wgs | patric | 542 |
| 66792 | Zymomonas mobilis mobilis DSM 14017 | 2811994956 | draft | img | 542 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 97.414 | no |
| anaerobic | no | 95.345 | yes |
| halophile | no | 75.231 | no |
| spore-forming | no | 96.284 | no |
| glucose-util | yes | 79.059 | no |
| thermophile | no | 86.829 | yes |
| flagellated | no | 71.989 | no |
| aerobic | no | 90.502 | yes |
| motile | yes | 81.061 | no |
| glucose-ferment | no | 63.593 | no |
External links
@ref: 22323
culture collection no.: DSM 14017, PROIMI A1
straininfo link
- @ref: 89501
- straininfo: 399211
literature
- topic: Enzymology
- Pubmed-ID: 7590162
- title: Construction of an integrative shuttle vector for Zymomonas mobilis.
- authors: Delgado OD, Abate CM, Sineriz F
- journal: FEMS Microbiol Lett
- DOI: 10.1111/j.1574-6968.1995.tb07805.x
- year: 1995
- mesh: Chromosome Mapping, Electroporation, Escherichia coli/genetics, Genetic Vectors/chemistry/*isolation & purification, Plasmids/chemistry/*isolation & purification, Restriction Mapping, Zymomonas/*genetics
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22323 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14017 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14017) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89501 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399211.1 |