Strain identifier

BacDive ID: 131020

Type strain: No

Species: Staphylococcus warneri

Strain Designation: JM-8

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; JM-8

NCBI tax ID(s): 1292 (species)

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General

@ref: 22312

BacDive-ID: 131020

DSM-Number: 28567

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen

description: Staphylococcus warneri JM-8 is a mesophilic human pathogen that was isolated from colonic mucosa; TNFdeltaARE/+ C57BL/6 mouse.

NCBI tax id

  • NCBI tax id: 1292
  • Matching level: species

strain history

  • @ref: 22312
  • history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; JM-8

doi: 10.13145/bacdive131020.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus warneri
  • full scientific name: Staphylococcus warneri Kloos and Schleifer 1975 (Approved Lists 1980)

@ref: 22312

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus warneri

full scientific name: Staphylococcus warneri Kloos and Schleifer 1975

strain designation: JM-8

type strain: no

Morphology

colony morphology

  • @ref: 22312
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 22312
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

  • @ref: 22312
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea+hydrolysis
6837529016arginine+hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine-fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68375beta-glucuronidase+3.2.1.31
68375pyrrolidonyl arylamidase-3.4.19.3
68375alkaline phosphatase-3.1.3.1
68375L-arginine arylamidase-
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
22312++--++-+/---+/----++-----+---+
22312++--++-++++---+++---++---+
22312++--++-++++---+++---++---+

Isolation, sampling and environmental information

isolation

  • @ref: 22312
  • sample type: colonic mucosa; TNFdeltaARE/+ C57BL/6 mouse
  • geographic location: Freising
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine

Safety information

risk assessment

  • @ref: 22312
  • pathogenicity human: yes, in single cases
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22312
  • description: Staphylococcus warneri strain JM8 16S ribosomal RNA gene, partial sequence
  • accession: KR364790
  • length: 1402
  • database: ena
  • NCBI tax ID: 1292

Genome sequences

  • @ref: 66792
  • description: Staphylococcus warneri DSM 28567
  • accession: GCA_024621925
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1292

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno94.061no
gram-positiveyes90.514no
anaerobicno99.309no
aerobicyes92.163no
halophileyes96.009no
spore-formingno90.706no
motileno91.668no
glucose-fermentyes80.318yes
thermophileno99.797yes
glucose-utilyes90.758no

External links

@ref: 22312

culture collection no.: DSM 28567

straininfo link

  • @ref: 89491
  • straininfo: 401946

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22312Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28567Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28567)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68375Automatically annotated from API ID32STA
89491Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401946.1