Strain identifier
BacDive ID: 131010
Type strain: 
Species: Rhodococcus rhodochrous
Strain Designation: PY11
Strain history: <- J. Vaitekunas, Vilnis Univ., Inst. of Biochemistry, Dep. of Mol. Microb. and Biotech., Lithuania; PY11
NCBI tax ID(s): 1829 (species)
General
@ref: 22302
BacDive-ID: 131010
DSM-Number: 101666
keywords: 16S sequence, mesophilic, human pathogen
description: Rhodococcus rhodochrous PY11 is a mesophilic human pathogen.
NCBI tax id
- NCBI tax id: 1829
- Matching level: species
strain history
- @ref: 22302
- history: <- J. Vaitekunas, Vilnis Univ., Inst. of Biochemistry, Dep. of Mol. Microb. and Biotech., Lithuania; PY11
doi: 10.13145/bacdive131010.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus rhodochrous
- full scientific name: Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974 (Approved Lists 1980)
synonyms
@ref synonym 20215 Staphylococcus rhodochrous 20215 Rhodococcus roseus
@ref: 22302
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus rhodochrous
full scientific name: Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974 emend. Nouioui et al. 2018
strain designation: PY11
type strain: no
Morphology
multimedia
- @ref: 22302
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_101666.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 22302
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 22302
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22302
- country: Lithuania
- origin.country: LTU
- continent: Europe
taxonmaps
- @ref: 69479
- File name: preview.99_4519.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_14;97_14;98_16;99_4519&stattab=map
- Last taxonomy: Rhodococcus
- 16S sequence: KT951673
- Sequence Identity:
- Total samples: 3510
- soil counts: 1489
- aquatic counts: 660
- animal counts: 1166
- plant counts: 195
Safety information
risk assessment
- @ref: 22302
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22302
- description: Rhodococcus sp. PY11 16S ribosomal RNA gene, partial sequence
- accession: KT951673
- length: 1523
- database: ena
- NCBI tax ID: 551544
External links
@ref: 22302
culture collection no.: DSM 101666
straininfo link
- @ref: 89481
- straininfo: 403937
literature
- topic: Metabolism
- Pubmed-ID: 26655765
- title: A 2-Hydroxypyridine Catabolism Pathway in Rhodococcus rhodochrous Strain PY11.
- authors: Vaitekunas J, Gasparaviciute R, Rutkiene R, Tauraite D, Meskys R
- journal: Appl Environ Microbiol
- DOI: 10.1128/AEM.02975-15
- year: 2015
- mesh: Biotransformation, Carbon/metabolism, Metabolic Networks and Pathways/*genetics, Multigene Family, Pyridones/*metabolism, Rhodococcus/growth & development/*metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22302 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101666 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101666) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89481 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403937.1 |