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Strain identifier

BacDive ID: 130994

Type strain: No

Species: Proteus mirabilis

Strain Designation: CD1-T1542

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; CD1-T1542

NCBI tax ID(s): 584 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22286

BacDive-ID: 130994

DSM-Number: 28629

keywords: 16S sequence, Bacteria, mesophilic, human pathogen

description: Proteus mirabilis CD1-T1542 is a mesophilic human pathogen that was isolated from caecal content; wildtype C57BL/6 mouse.

NCBI tax id

  • NCBI tax id: 584
  • Matching level: species

strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; CD1-T1542

doi: 10.13145/bacdive130994.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Proteus
  • species: Proteus mirabilis
  • full scientific name: Proteus mirabilis Hauser 1885 (Approved Lists 1980)

@ref: 22286

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Morganellaceae

genus: Proteus

species: Proteus mirabilis

full scientific name: Proteus mirabilis Hauser 1885

strain designation: CD1-T1542

type strain: no

Morphology

colony morphology

  • @ref: 22286
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22286CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
22286NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 22286
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose-fermentation
6836827613amygdalin-fermentation
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836816301nitriteyes
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2
22286---+++++--++---------
22286---+++++--++---------+

Isolation, sampling and environmental information

isolation

  • @ref: 22286
  • sample type: caecal content; wildtype C57BL/6 mouse
  • geographic location: Freising
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine
#Host Body Product#Gastrointestinal tract#Caecal content

taxonmaps

  • @ref: 69479
  • File name: preview.99_15.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_12;97_12;98_14;99_15&stattab=map
  • Last taxonomy: Proteus
  • 16S sequence: KR364787
  • Sequence Identity:
  • Total samples: 48876
  • soil counts: 1471
  • aquatic counts: 2889
  • animal counts: 43429
  • plant counts: 1087

Safety information

risk assessment

  • @ref: 22286
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22286
  • description: Proteus sp. CD1-T1542 16S ribosomal RNA gene, partial sequence
  • accession: KR364787
  • length: 1429
  • database: ena
  • NCBI tax ID: 1796647

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Proteus mirabilis DSM 28629GCA_024621985contigncbi584
66792Pseudomonas aeruginosa AZPAE13866GCA_000795585scaffoldpatric287

External links

@ref: 22286

culture collection no.: DSM 28629

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22286Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28629Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28629)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/