Strain identifier
BacDive ID: 130994
Type strain:
Species: Proteus mirabilis
Strain Designation: CD1-T1542
Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; CD1-T1542
NCBI tax ID(s): 584 (species)
General
@ref: 22286
BacDive-ID: 130994
DSM-Number: 28629
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen
description: Proteus mirabilis CD1-T1542 is a mesophilic human pathogen that was isolated from caecal content; wildtype C57BL/6 mouse.
NCBI tax id
- NCBI tax id: 584
- Matching level: species
strain history
- @ref: 22286
- history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; CD1-T1542
doi: 10.13145/bacdive130994.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Morganellaceae
- genus: Proteus
- species: Proteus mirabilis
- full scientific name: Proteus mirabilis Hauser 1885 (Approved Lists 1980)
@ref: 22286
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Morganellaceae
genus: Proteus
species: Proteus mirabilis
full scientific name: Proteus mirabilis Hauser 1885
strain designation: CD1-T1542
type strain: no
Morphology
colony morphology
- @ref: 22286
- incubation period: 2-3 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
22286 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
22286 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
- @ref: 22286
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 17632 | nitrate | + | reduction |
68368 | 30849 | L-arabinose | - | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | - | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | - | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 5291 | gelatin | + | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 16301 | nitrite | yes |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | + | |
68368 | tryptophan deaminase | + | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | NO2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22286 | - | - | - | + | + | + | + | + | - | - | + | + | - | - | - | - | - | - | - | - | - | |
22286 | - | - | - | + | + | + | + | + | - | - | + | + | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 22286
- sample type: caecal content; wildtype C57BL/6 mouse
- geographic location: Freising
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Muridae (Mouse/Rat) |
#Host Body-Site | #Gastrointestinal tract | #Large intestine |
#Host Body Product | #Gastrointestinal tract | #Caecal content |
taxonmaps
- @ref: 69479
- File name: preview.99_15.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_12;97_12;98_14;99_15&stattab=map
- Last taxonomy: Proteus
- 16S sequence: KR364787
- Sequence Identity:
- Total samples: 48876
- soil counts: 1471
- aquatic counts: 2889
- animal counts: 43429
- plant counts: 1087
Safety information
risk assessment
- @ref: 22286
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22286
- description: Proteus sp. CD1-T1542 16S ribosomal RNA gene, partial sequence
- accession: KR364787
- length: 1429
- database: ena
- NCBI tax ID: 1796647
Genome sequences
- @ref: 66792
- description: Proteus mirabilis DSM 28629
- accession: GCA_024621985
- assembly level: contig
- database: ncbi
- NCBI tax ID: 584
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | yes | 74.082 | no |
gram-positive | no | 98.293 | no |
anaerobic | no | 98.325 | no |
aerobic | yes | 68.072 | no |
halophile | no | 87.475 | no |
spore-forming | no | 95.466 | no |
motile | yes | 89.276 | no |
glucose-ferment | yes | 90.819 | no |
thermophile | no | 99.343 | yes |
glucose-util | yes | 88.506 | no |
External links
@ref: 22286
culture collection no.: DSM 28629
straininfo link
- @ref: 89466
- straininfo: 406371
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22286 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28629 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28629) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68368 | Automatically annotated from API 20E | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
89466 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406371.1 |