Strain identifier
BacDive ID: 130981
Type strain: 
Species: Methylobacterium sp.
Strain Designation: TA88+4-73
Strain history: <- P. Kämpfer, Justus-Liebig-Universität; TA88+4-73 <- S.A. Wellner
NCBI tax ID(s): 409 (species)
General
@ref: 22273
BacDive-ID: 130981
DSM-Number: 23632
keywords: genome sequence, Bacteria, mesophilic
description: Methylobacterium sp. TA88+4-73 is a mesophilic bacterium that was isolated from leaf of trifolium repens.
NCBI tax id
- NCBI tax id: 409
- Matching level: species
strain history
- @ref: 22273
- history: <- P. Kämpfer, Justus-Liebig-Universität; TA88+4-73 <- S.A. Wellner
doi: 10.13145/bacdive130981.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Methylobacteriaceae
- genus: Methylobacterium
- species: Methylobacterium sp.
- full scientific name: Methylobacterium Patt et al. 1976 (Approved Lists 1980)
@ref: 22273
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Methylobacteriaceae
genus: Methylobacterium
species: Methylobacterium sp.
full scientific name: Methylobacterium sp.
strain designation: TA88+4-73
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22273 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Agar 15.0 g/l Methanol 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 22273 | METHYLOBACTERIUM MEDIUM (DSMZ Medium 125) | yes | https://mediadive.dsmz.de/medium/125 | Name: METHYLOBACTERIUM MEDIUM (DSMZ Medium 125) Composition: Agar 12.0 g/l KNO3 1.0 g/l Na2HPO4 0.23 g/l MgSO4 x 7 H2O 0.2 g/l NaH2PO4 0.07 g/l CaCl2 x 2 H2O 0.02 g/l FeSO4 x 7 H2O 0.001 g/l ZnSO4 x 7 H2O 7e-05 g/l H3BO3 1e-05 g/l MnSO4 x 5 H2O 1e-05 g/l MoO3 1e-05 g/l CuSO4 x 5 H2O 5e-06 g/l Distilled water |
culture temp
- @ref: 22273
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 22273
- sample type: leaf of trifolium repens
- geographic location: Schwäbische Alp, Baden-Württemberg
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
- @ref: 66792
- description: Methylobacterium trifolii DSM 23632
- accession: GCA_022179685
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1003092
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 62.768 | no |
| gram-positive | no | 97.851 | no |
| anaerobic | no | 97.833 | no |
| aerobic | yes | 92.123 | no |
| halophile | no | 92.61 | no |
| spore-forming | no | 94.821 | no |
| motile | yes | 88.769 | no |
| glucose-ferment | no | 90.221 | no |
| thermophile | no | 99.013 | no |
| glucose-util | yes | 89.956 | no |
External links
@ref: 22273
culture collection no.: DSM 23632
straininfo link
- @ref: 89453
- straininfo: 398837
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22273 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23632 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23632) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89453 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398837.1 |