Strain identifier
BacDive ID: 130976
Type strain:
Species: Bacteroides neonati
Strain Designation: NEC1412b3
Strain history: <- I. Pagnier, URMITE; NEC1412b3 <- C. Nadim, URMITE;
NCBI tax ID(s): 1347393 (species)
General
@ref: 22268
BacDive-ID: 130976
DSM-Number: 26805
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Bacteroides neonati NEC1412b3 is an anaerobe, mesophilic bacterium that was isolated from human stool.
NCBI tax id
- NCBI tax id: 1347393
- Matching level: species
strain history
- @ref: 22268
- history: <- I. Pagnier, URMITE; NEC1412b3 <- C. Nadim, URMITE;
doi: 10.13145/bacdive130976.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Bacteroidaceae
- genus: Bacteroides
- species: Bacteroides neonati
- full scientific name: Bacteroides neonati Cassir et al. 2014
@ref: 22268
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Bacteroidaceae
genus: Bacteroides
species: Bacteroides neonati
full scientific name: Bacteroides neonati Cassir et al. 2017
strain designation: NEC1412b3
type strain: no
Morphology
colony morphology
- @ref: 22268
- incubation period: 1-2 days
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
22268 | FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1203.pdf | |
22268 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
culture temp
- @ref: 22268
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 22268
- oxygen tolerance: anaerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16634 | raffinose | - | fermentation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | + | energy source |
metabolite production
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | serine arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | alanine arylamidase | + | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | + | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | - | |
68380 | alkaline phosphatase | + | 3.1.3.1 |
68380 | tryptophan deaminase | + | 4.1.99.1 |
68380 | alpha-fucosidase | + | 3.2.1.51 |
68380 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | + | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | + | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22268 | - | - | - | + | - | + | - | - | - | + | +/- | - | - | + | - | + | + | - | - | + | - | - | - | - | + | + | - | + | - |
22268 | - | - | - | + | - | + | - | - | - | + | + | - | + | + | - | + | + | - | - | + | - | - | - | - | + | +/- | - | +/- | - |
Isolation, sampling and environmental information
isolation
- @ref: 22268
- sample type: human stool
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
- latitude: 43.2965
- longitude: 5.3698
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
#Host | #Human |
taxonmaps
- @ref: 69479
- File name: preview.99_3527.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_21;96_1836;97_2205;98_2704;99_3527&stattab=map
- Last taxonomy: Bacteroides neonati subclade
- 16S sequence: HG315678
- Sequence Identity:
- Total samples: 31698
- soil counts: 398
- aquatic counts: 1979
- animal counts: 29150
- plant counts: 171
Sequence information
16S sequences
- @ref: 22268
- description: Bacteroidaceae bacterium MS4 partial 16S rRNA gene, strain MS4
- accession: HG315678
- length: 1481
- database: ena
- NCBI tax ID: 1347393
GC content
- @ref: 22268
- GC-content: 43.53
- method: sequence analysis
External links
@ref: 22268
culture collection no.: DSM 26805, CSUR P 1500
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22268 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26805 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26805) | |
68380 | Automatically annotated from API rID32A | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |