Strain identifier

BacDive ID: 130976

Type strain: No

Species: Bacteroides neonati

Strain Designation: NEC1412b3

Strain history: <- I. Pagnier, URMITE; NEC1412b3 <- C. Nadim, URMITE;

NCBI tax ID(s): 1347393 (species)

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General

@ref: 22268

BacDive-ID: 130976

DSM-Number: 26805

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Bacteroides neonati NEC1412b3 is an anaerobe, mesophilic bacterium that was isolated from human stool.

NCBI tax id

  • NCBI tax id: 1347393
  • Matching level: species

strain history

  • @ref: 22268
  • history: <- I. Pagnier, URMITE; NEC1412b3 <- C. Nadim, URMITE;

doi: 10.13145/bacdive130976.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Bacteroidaceae
  • genus: Bacteroides
  • species: Bacteroides neonati
  • full scientific name: Bacteroides neonati Cassir et al. 2014

@ref: 22268

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Bacteroidaceae

genus: Bacteroides

species: Bacteroides neonati

full scientific name: Bacteroides neonati Cassir et al. 2017

strain designation: NEC1412b3

type strain: no

Morphology

colony morphology

  • @ref: 22268
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22268FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1203.pdf
22268COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 22268
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 22268
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016634raffinose-fermentation
6838017632nitrate-reduction
6838027897tryptophan+energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68380serine arylamidase-
68380histidine arylamidase-
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase+3.2.1.51
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
22268---+-+---++/---+-++--+----++-+-
22268---+-+---++-++-++--+----++/--+/--

Isolation, sampling and environmental information

isolation

  • @ref: 22268
  • sample type: human stool
  • geographic location: Marseille
  • country: France
  • origin.country: FRA
  • continent: Europe
  • latitude: 43.2965
  • longitude: 5.3698

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human

taxonmaps

  • @ref: 69479
  • File name: preview.99_3527.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_21;96_1836;97_2205;98_2704;99_3527&stattab=map
  • Last taxonomy: Bacteroides neonati subclade
  • 16S sequence: HG315678
  • Sequence Identity:
  • Total samples: 31698
  • soil counts: 398
  • aquatic counts: 1979
  • animal counts: 29150
  • plant counts: 171

Sequence information

16S sequences

  • @ref: 22268
  • description: Bacteroidaceae bacterium MS4 partial 16S rRNA gene, strain MS4
  • accession: HG315678
  • length: 1481
  • database: ena
  • NCBI tax ID: 1347393

GC content

  • @ref: 22268
  • GC-content: 43.53
  • method: sequence analysis

External links

@ref: 22268

culture collection no.: DSM 26805, CSUR P 1500

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22268Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26805Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26805)
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/