Strain identifier

BacDive ID: 130937

Type strain: Yes

Species: Corynebacterium uropygiale

Strain history: LMG 28616 <-- M. S. Braun; Inst. of Pharm. & Mo. Biotechnol., Heidelberg Univ., Germany; Iso10.

NCBI tax ID(s): 1775911 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22229

BacDive-ID: 130937

DSM-Number: 46817

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Corynebacterium uropygiale DSM 46817 is a mesophilic bacterium that was isolated from preen glands of healthy turkeys Meleagris gallopavo.

NCBI tax id

  • NCBI tax id: 1775911
  • Matching level: species

strain history

@refhistory
22229<- M. S. Braun, Universität Heidelberg; Iso10
67770LMG 28616 <-- M. S. Braun; Inst. of Pharm. & Mo. Biotechnol., Heidelberg Univ., Germany; Iso10.

doi: 10.13145/bacdive130937.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium uropygiale
  • full scientific name: Corynebacterium uropygiale Braun et al. 2016

@ref: 22229

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium uropygiale

full scientific name: Corynebacterium uropygiale Braun et al. 2016

type strain: yes

Morphology

multimedia

  • @ref: 22229
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46817.jpg
  • caption: Medium 535a 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22229TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)yeshttps://mediadive.dsmz.de/medium/535aName: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
22229LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
22229positivegrowth37mesophilic
67770positivegrowth37mesophilic

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
22229preen glands of healthy turkeys Meleagris gallopavoMeleagris gallopavoHeidelbergGermanyDEUEurope
67770Preen glands of a healthy turkey (Meleagris gallopavo)Meleagris gallopavoHeidelbergGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Host#Birds
#Host Body-Site#Organ#Skin, Nail, Hair

taxonmaps

  • @ref: 69479
  • File name: preview.99_44156.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_20321;97_25274;98_32049;99_44156&stattab=map
  • Last taxonomy: Corynebacterium uropygiale subclade
  • 16S sequence: KT314237
  • Sequence Identity:
  • Total samples: 1421
  • soil counts: 63
  • aquatic counts: 162
  • animal counts: 1151
  • plant counts: 45

Safety information

risk assessment

  • @ref: 22229
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22229
  • description: Corynebacterium uropygiale strain Iso10 16S ribosomal RNA gene, partial sequence
  • accession: KT314237
  • length: 1399
  • database: ena
  • NCBI tax ID: 1775911

Genome sequences

  • @ref: 66792
  • description: Corynebacterium uropygiale JCM 32435
  • accession: GCA_021568315
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1775911

GC content

  • @ref: 22229
  • GC-content: 60.7
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.79no
gram-positiveyes95.134no
anaerobicno99.374no
aerobicno58.545no
halophileyes78.272no
spore-formingno95.645no
motileno95.666no
glucose-fermentyes63.607no
thermophileno91.984yes
glucose-utilyes87.584no

External links

@ref: 22229

culture collection no.: DSM 46817, LMG 28616, ISO Iso10, ISO 10, JCM 32435

straininfo link

  • @ref: 89414
  • straininfo: 396500

literature

  • topic: Phylogeny
  • Pubmed-ID: 26776107
  • title: Corynebacterium uropygiale sp. nov., isolated from the preen gland of Turkeys (Meleagris gallopavo).
  • authors: Braun MS, Zimmermann S, Danner M, Rashid HO, Wink M
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2015.12.001
  • year: 2015
  • mesh: Animals, Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, Corynebacterium/*classification/drug effects/genetics/isolation & purification, Corynebacterium Infections/*veterinary, Genes, Bacterial, Microbial Sensitivity Tests, Phylogeny, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Turkeys/*microbiology
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22229Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46817Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46817)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89414Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396500.1