Strain identifier
BacDive ID: 130937
Type strain:
Species: Corynebacterium uropygiale
Strain history: LMG 28616 <-- M. S. Braun; Inst. of Pharm. & Mo. Biotechnol., Heidelberg Univ., Germany; Iso10.
NCBI tax ID(s): 1775911 (species)
General
@ref: 22229
BacDive-ID: 130937
DSM-Number: 46817
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Corynebacterium uropygiale DSM 46817 is a mesophilic bacterium that was isolated from preen glands of healthy turkeys Meleagris gallopavo.
NCBI tax id
- NCBI tax id: 1775911
- Matching level: species
strain history
@ref | history |
---|---|
22229 | <- M. S. Braun, Universität Heidelberg; Iso10 |
67770 | LMG 28616 <-- M. S. Braun; Inst. of Pharm. & Mo. Biotechnol., Heidelberg Univ., Germany; Iso10. |
doi: 10.13145/bacdive130937.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Corynebacteriaceae
- genus: Corynebacterium
- species: Corynebacterium uropygiale
- full scientific name: Corynebacterium uropygiale Braun et al. 2016
@ref: 22229
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Corynebacteriaceae
genus: Corynebacterium
species: Corynebacterium uropygiale
full scientific name: Corynebacterium uropygiale Braun et al. 2016
type strain: yes
Morphology
multimedia
- @ref: 22229
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46817.jpg
- caption: Medium 535a 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
22229 | TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) | yes | https://mediadive.dsmz.de/medium/535a | Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
22229 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | yes | https://mediadive.dsmz.de/medium/381 | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
22229 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
22229 | preen glands of healthy turkeys Meleagris gallopavo | Meleagris gallopavo | Heidelberg | Germany | DEU | Europe |
67770 | Preen glands of a healthy turkey (Meleagris gallopavo) | Meleagris gallopavo | Heidelberg | Germany | DEU | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Birds | |
#Host Body-Site | #Organ | #Skin, Nail, Hair |
taxonmaps
- @ref: 69479
- File name: preview.99_44156.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_20321;97_25274;98_32049;99_44156&stattab=map
- Last taxonomy: Corynebacterium uropygiale subclade
- 16S sequence: KT314237
- Sequence Identity:
- Total samples: 1421
- soil counts: 63
- aquatic counts: 162
- animal counts: 1151
- plant counts: 45
Safety information
risk assessment
- @ref: 22229
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22229
- description: Corynebacterium uropygiale strain Iso10 16S ribosomal RNA gene, partial sequence
- accession: KT314237
- length: 1399
- database: ena
- NCBI tax ID: 1775911
Genome sequences
- @ref: 66792
- description: Corynebacterium uropygiale JCM 32435
- accession: GCA_021568315
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1775911
GC content
- @ref: 22229
- GC-content: 60.7
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 97.79 | no |
gram-positive | yes | 95.134 | no |
anaerobic | no | 99.374 | no |
aerobic | no | 58.545 | no |
halophile | yes | 78.272 | no |
spore-forming | no | 95.645 | no |
motile | no | 95.666 | no |
glucose-ferment | yes | 63.607 | no |
thermophile | no | 91.984 | yes |
glucose-util | yes | 87.584 | no |
External links
@ref: 22229
culture collection no.: DSM 46817, LMG 28616, ISO Iso10, ISO 10, JCM 32435
straininfo link
- @ref: 89414
- straininfo: 396500
literature
- topic: Phylogeny
- Pubmed-ID: 26776107
- title: Corynebacterium uropygiale sp. nov., isolated from the preen gland of Turkeys (Meleagris gallopavo).
- authors: Braun MS, Zimmermann S, Danner M, Rashid HO, Wink M
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2015.12.001
- year: 2015
- mesh: Animals, Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, Corynebacterium/*classification/drug effects/genetics/isolation & purification, Corynebacterium Infections/*veterinary, Genes, Bacterial, Microbial Sensitivity Tests, Phylogeny, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Turkeys/*microbiology
- topic2: Enzymology
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
22229 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46817 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46817) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
89414 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396500.1 |