Strain identifier

BacDive ID: 130923

Type strain: No

Species: Clostridioides mangenotii

Strain Designation: G10-CCK1R4-PYG-100

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; G10-CCK1R4-PYG-100

NCBI tax ID(s): 1540 (species)

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General

@ref: 22215

BacDive-ID: 130923

DSM-Number: 29133

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Clostridioides mangenotii G10-CCK1R4-PYG-100 is an anaerobe, mesophilic bacterium that was isolated from mouse intestine.

NCBI tax id

  • NCBI tax id: 1540
  • Matching level: species

strain history

  • @ref: 22215
  • history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; G10-CCK1R4-PYG-100

doi: 10.13145/bacdive130923.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptostreptococcaceae
  • genus: Clostridioides
  • species: Clostridioides mangenotii
  • full scientific name: Clostridioides mangenotii (Prévot and Zimmès-Chaverou 1947) Lawson et al. 2016

  • synonyms

    @refsynonym
    20215Clostridium mangenotii
    20215Inflabilis mangenoti

@ref: 22215

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptostreptococcaceae

genus: Clostridioides

species: Clostridioides mangenotii

full scientific name: Clostridioides mangenotii (Prévot and Zimmès-Chaverou 1947) Lawson et al. 2016

strain designation: G10-CCK1R4-PYG-100

type strain: no

Morphology

colony morphology

  • @ref: 22215
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22215FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)yeshttps://mediadive.dsmz.de/medium/1203Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water
22215CHOPPED MEAT MEDIUM (DSMZ Medium 78)yeshttps://mediadive.dsmz.de/medium/78Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
22215WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 22215
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 22215
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
22215-+----------------+----------

Isolation, sampling and environmental information

isolation

  • @ref: 22215
  • sample type: mouse intestine
  • geographic location: Freising
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_4722.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2;96_2342;97_2849;98_3542;99_4722&stattab=map
  • Last taxonomy: Clostridioides mangenotii subclade
  • 16S sequence: KR364752
  • Sequence Identity:
  • Total samples: 22650
  • soil counts: 5343
  • aquatic counts: 1722
  • animal counts: 14515
  • plant counts: 1070

Safety information

risk assessment

  • @ref: 22215
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22215
  • description: Clostridioides mangenotii strain G10-CCK1R4-PYG-100 16S ribosomal RNA gene, partial sequence
  • accession: KR364752
  • length: 1400
  • database: ena
  • NCBI tax ID: 1540

Genome sequences

  • @ref: 66792
  • description: Clostridioides mangenotii DSM 29133
  • accession: GCA_024622925
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1540

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno77.789no
gram-positiveyes89.436no
anaerobicyes98.912yes
aerobicno97.683yes
halophileno79.164no
spore-formingyes90.451no
glucose-fermentno55.017no
thermophileno99.715no
glucose-utilyes82.034no
motileyes67.431no

External links

@ref: 22215

culture collection no.: DSM 29133

straininfo link

  • @ref: 89403
  • straininfo: 403097

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22215Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29133Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29133)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89403Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403097.1