Strain identifier

BacDive ID: 130909

Type strain: No

Species: Flavonifractor plautii

Strain Designation: WHC-424-CC-2

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; WHC-424-CC-2

NCBI tax ID(s): 292800 (species)

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General

@ref: 22201

BacDive-ID: 130909

DSM-Number: 29136

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Flavonifractor plautii WHC-424-CC-2 is an anaerobe, mesophilic bacterium that was isolated from caecal content; TNFdeltaARE/+ C57BL/6 mouse.

NCBI tax id

  • NCBI tax id: 292800
  • Matching level: species

strain history

  • @ref: 22201
  • history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; WHC-424-CC-2

doi: 10.13145/bacdive130909.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Flavonifractor
  • species: Flavonifractor plautii
  • full scientific name: Flavonifractor plautii (Séguin 1928) Carlier et al. 2010

  • synonyms

    @refsynonym
    20215Fusobacterium plautii
    20215Fusobacterium plauti
    20215Clostridium orbiscindens
    20215Eubacterium plautii

@ref: 22201

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridia, not assigned to order

family: Oscillospiraceae

genus: Flavonifractor

species: Flavonifractor plautii

full scientific name: Flavonifractor plautii (Séguin 1928) Carlier et al. 2010

strain designation: WHC-424-CC-2

type strain: no

Morphology

colony morphology

  • @ref: 22201
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22201PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
22201WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 22201
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 22201
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
683676731melezitose-builds acid from
6836716024D-mannose-builds acid from
6836717057cellobiose-builds acid from
6836717754glycerol-builds acid from
683674853esculin-hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose-builds acid from
6836717814salicin-builds acid from
6836717306maltose-builds acid from
6836717992sucrose-builds acid from
6836717716lactose-builds acid from
6836716899D-mannitol-builds acid from
6836717634D-glucose-builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68367catalase-1.11.1.6
68367beta-glucosidase-3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRECAT
22201---------------------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
22201-----------------+/----+/--------
22201-----------------+/----+/--------

Isolation, sampling and environmental information

isolation

  • @ref: 22201
  • sample type: caecal content; TNFdeltaARE/+ C57BL/6 mouse
  • geographic location: Freising
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine
#Host Body Product#Gastrointestinal tract#Caecal content

taxonmaps

  • @ref: 69479
  • File name: preview.99_447.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_91;96_299;97_331;98_372;99_447&stattab=map
  • Last taxonomy: Flavonifractor plautii subclade
  • 16S sequence: KU196086
  • Sequence Identity:
  • Total samples: 272590
  • soil counts: 1740
  • aquatic counts: 3332
  • animal counts: 266872
  • plant counts: 646

Safety information

risk assessment

  • @ref: 22201
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22201
  • description: Flavonifractor plautii strain DSM 29136 16S ribosomal RNA gene, partial sequence
  • accession: KU196086
  • length: 1383
  • database: ena
  • NCBI tax ID: 292800

Genome sequences

  • @ref: 66792
  • description: Flavonifractor plautii DSM 29136
  • accession: GCA_024622615
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 292800

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno77.188no
gram-positiveno51.733no
anaerobicyes99.612no
aerobicno98.395yes
halophileno93.958no
spore-formingyes54.874no
motileyes77.283no
glucose-fermentyes64.635no
thermophileno95.934yes
glucose-utilyes86.041no

External links

@ref: 22201

culture collection no.: DSM 29136

straininfo link

  • @ref: 89389
  • straininfo: 405640

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22201Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29136Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29136)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89389Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405640.1