Strain identifier

BacDive ID: 130906

Type strain: No

Species: Cellulosimicrobium cellulans

Strain Designation: CD1-BL204R1

Strain history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; CD1-BL204R1

NCBI tax ID(s): 1710 (species)

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General

@ref: 22198

BacDive-ID: 130906

DSM-Number: 29131

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen

description: Cellulosimicrobium cellulans CD1-BL204R1 is an anaerobe, mesophilic human pathogen that was isolated from caecal content; wildtype C57BL/6 mouse.

NCBI tax id

  • NCBI tax id: 1710
  • Matching level: species

strain history

  • @ref: 22198
  • history: <- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; CD1-BL204R1

doi: 10.13145/bacdive130906.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Promicromonosporaceae
  • genus: Cellulosimicrobium
  • species: Cellulosimicrobium cellulans
  • full scientific name: Cellulosimicrobium cellulans (Metcalfe and Brown 1957) Schumann et al. 2001

  • synonyms

    @refsynonym
    20215Brevibacterium lyticum
    20215Cellulomonas cartae
    20215Oerskovia xanthineolytica
    20215Nocardia cellulans
    20215Brevibacterium fermentans
    20215Cellulomonas cellulans
    20215Cellulomonas cartalyticum

@ref: 22198

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Promicromonosporaceae

genus: Cellulosimicrobium

species: Cellulosimicrobium cellulans

full scientific name: Cellulosimicrobium cellulans (Metcalfe and Brown 1957) Schumann et al. 2001

strain designation: CD1-BL204R1

type strain: no

Morphology

colony morphology

  • @ref: 22198
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22198TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
22198WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water

culture temp

  • @ref: 22198
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 22198
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea-hydrolysis
6837529016arginine-hydrolysis
6837518257ornithine-degradation
683754853esculin+hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose+fermentation
6837517306maltose+fermentation
6837517716lactose-fermentation
6837527082trehalose+fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose+fermentation
6837517057cellobiose+fermentation
6837517632nitrate+reduction
6837517992sucrose+fermentation
6837559640N-acetylglucosamine+fermentation
6837532528turanose+fermentation
6837522599arabinose+fermentation

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375alkaline phosphatase+3.1.3.1
68375beta-galactosidase+3.2.1.23
68375beta-glucosidase+3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease-3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
22198---+++++-+--+++-++/-++/--++++-
22198---+++++-+--+++-+++++++++-
22198---+++++-+--+++-++/-++/--++++-

Isolation, sampling and environmental information

isolation

  • @ref: 22198
  • sample type: caecal content; wildtype C57BL/6 mouse
  • geographic location: Freising
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine
#Host Body Product#Gastrointestinal tract#Caecal content

taxonmaps

  • @ref: 69479
  • File name: preview.99_256.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_179;97_195;98_218;99_256&stattab=map
  • Last taxonomy: Cellulosimicrobium
  • 16S sequence: KR364748
  • Sequence Identity:
  • Total samples: 5475
  • soil counts: 1873
  • aquatic counts: 417
  • animal counts: 1680
  • plant counts: 1505

Safety information

risk assessment

  • @ref: 22198
  • pathogenicity human: yes, in single cases
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22198
  • description: Cellulosimicrobium sp. BL204R1 16S ribosomal RNA gene, partial sequence
  • accession: KR364748
  • length: 1424
  • database: ena
  • NCBI tax ID: 1796617

Genome sequences

  • @ref: 66792
  • description: Cellulosimicrobium cellulans DSM 29131
  • accession: GCA_024622945
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 1710

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno91.778no
gram-positiveyes88.955no
anaerobicno97.935yes
aerobicyes91.319yes
halophileno94.793no
spore-formingno85.911no
glucose-fermentno64.708no
thermophileno98.589yes
glucose-utilyes87.783no
motileyes70.803no

External links

@ref: 22198

culture collection no.: DSM 29131

straininfo link

  • @ref: 89386
  • straininfo: 399200

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22198Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29131Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29131)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89386Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399200.1