Strain identifier
BacDive ID: 130891
Type strain: 
Species: Campylobacter coli
Strain Designation: 13, CNET051
Strain history: <- F. van der Wal, Animal Sciences Group, Wageningen UR, Lelystad, Netherlands; CNET051 <- F. Mégraud, Centre National de Référence des Helicobacters et Campylobacters, Univ. Bordeaux Segalen, France; 13
NCBI tax ID(s): 195 (species)
General
@ref: 22811
BacDive-ID: 130891
DSM-Number: 24155
keywords: genome sequence, Bacteria, microaerophile, Gram-negative
description: Campylobacter coli 13 is a microaerophile, Gram-negative bacterium that was isolated from human.
NCBI tax id
- NCBI tax id: 195
- Matching level: species
strain history
- @ref: 22811
- history: <- F. van der Wal, Animal Sciences Group, Wageningen UR, Lelystad, Netherlands; CNET051 <- F. Mégraud, Centre National de Référence des Helicobacters et Campylobacters, Univ. Bordeaux Segalen, France; 13
doi: 10.13145/bacdive130891.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter coli
- full scientific name: Campylobacter coli (Doyle 1948) Véron and Chatelain 1973 (Approved Lists 1980)
synonyms
@ref synonym 20215 Campylobacter hyoilei 20215 Vibrio coli
@ref: 22811
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter coli
full scientific name: Campylobacter coli (Doyle 1948) Veron and Chatelain 1973
strain designation: 13, CNET051
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 125438 | negative | 98.955 |
| 125439 | negative | 98 |
colony morphology
- @ref: 22811
- incubation period: 1-2 days
Physiology and metabolism
oxygen tolerance
- @ref: 22811
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125438 | no | 93.143 |
| 125439 | no | 96.8 |
Isolation, sampling and environmental information
isolation
- @ref: 22811
- sample type: human
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Human
Safety information
risk assessment
- @ref: 22811
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Campylobacter coli 13
- accession: GCA_019734755
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 195
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.955 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 80.512 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 88.877 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.143 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 86.067 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 66.637 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 96.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 63.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 98 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 87.9 |
External links
@ref: 22811
culture collection no.: DSM 24155
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22811 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24155 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24155) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |