Strain identifier

BacDive ID: 130850

Type strain: Yes

Species: Sulfuriferula multivorans

Strain Designation: TTN

Strain history: <- T. Watanabe, Univ. Hokkaido; TTN <- T. Watanabe {2014}

NCBI tax ID(s): 1559896 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22155

BacDive-ID: 130850

DSM-Number: 29343

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Sulfuriferula multivorans TTN is a mesophilic, motile bacterium that was isolated from Thioploca sample from the sediment of a freshwater lake.

NCBI tax id

  • NCBI tax id: 1559896
  • Matching level: species

strain history

  • @ref: 22155
  • history: <- T. Watanabe, Univ. Hokkaido; TTN <- T. Watanabe {2014}

doi: 10.13145/bacdive130850.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Nitrosomonadales
  • family: Sulfuricellaceae
  • genus: Sulfuriferula
  • species: Sulfuriferula multivorans
  • full scientific name: Sulfuriferula multivorans Watanabe et al. 2015

@ref: 22155

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Hydrogenophilales

family: Sulfuricellaceae

genus: Sulfuriferula

species: Sulfuriferula multivorans

full scientific name: Sulfuriferula multivorans Watanabe et al. 2015

strain designation: TTN

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes99.353
69480100negative

colony morphology

  • @ref: 22155
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 22155
  • name: SULFURIFERULA MULTIVORANS MEDIUM (DSMZ Medium 1585)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1585
  • composition: Name: SULFURIFERULA MULTIVORANS MEDIUM (DSMZ Medium 1585) Composition: Na2S2O3 x 5 H2O 10.0 g/l Na2HPO4 x 12 H2O 3.0 g/l KH2PO4 1.8 g/l (NH4)2SO4 0.1 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.04 g/l MnSO4 x 5 H2O 0.03 g/l FeCl3 x 6 H2O 0.03 g/l Distilled water

culture temp

  • @ref: 22155
  • growth: positive
  • type: growth
  • temperature: 35
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.969

Isolation, sampling and environmental information

isolation

  • @ref: 22155
  • sample type: Thioploca sample from the sediment of a freshwater lake
  • host species: Thioploca
  • geographic location: Chitose, Lake Okotanpe
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Sediment
#Host#Microbial#Bacteria

taxonmaps

  • @ref: 69479
  • File name: preview.99_95512.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_13394;97_16290;98_65529;99_95512&stattab=map
  • Last taxonomy: Sulfuriferula multivorans subclade
  • 16S sequence: LC005593
  • Sequence Identity:
  • Total samples: 636
  • soil counts: 249
  • aquatic counts: 338
  • animal counts: 31
  • plant counts: 18

Safety information

risk assessment

  • @ref: 22155
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22155
  • description: Sulfuriferula multivorans gene for 16S ribosomal RNA, partial sequence
  • accession: LC005593
  • length: 1462
  • database: ena
  • NCBI tax ID: 1559896

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sulfuriferula multivorans TTNGCA_003851125scaffoldncbi1559896
66792Sulfuriferula multivorans TTN2837050608draftimg1559896

GC content

  • @ref: 22155
  • GC-content: 63
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.906no
flagellatedyes67.488no
gram-positiveno98.394no
anaerobicno90.977no
aerobicno74.733no
halophileno96.354no
spore-formingno93.206no
thermophileno97.995yes
glucose-utilno57.375no
glucose-fermentno88.912no

External links

@ref: 22155

culture collection no.: DSM 29343, NBRC 110683

straininfo link

  • @ref: 89337
  • straininfo: 404318

literature

  • topic: Phylogeny
  • Pubmed-ID: 25701846
  • title: Sulfuriferula multivorans gen. nov., sp. nov., isolated from a freshwater lake, reclassification of 'Thiobacillus plumbophilus' as Sulfuriferula plumbophilus sp. nov., and description of Sulfuricellaceae fam. nov. and Sulfuricellales ord. nov.
  • authors: Watanabe T, Kojima H, Fukui M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000129
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fresh Water/microbiology, Genes, Bacterial, Geologic Sediments/*microbiology, Japan, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thiobacillus/*classification/genetics/isolation & purification
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22155Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29343Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29343)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89337Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404318.1