Strain identifier
BacDive ID: 130850
Type strain:
Species: Sulfuriferula multivorans
Strain Designation: TTN
Strain history: <- T. Watanabe, Univ. Hokkaido; TTN <- T. Watanabe {2014}
NCBI tax ID(s): 1559896 (species)
General
@ref: 22155
BacDive-ID: 130850
DSM-Number: 29343
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Sulfuriferula multivorans TTN is a mesophilic, motile bacterium that was isolated from Thioploca sample from the sediment of a freshwater lake.
NCBI tax id
- NCBI tax id: 1559896
- Matching level: species
strain history
- @ref: 22155
- history: <- T. Watanabe, Univ. Hokkaido; TTN <- T. Watanabe {2014}
doi: 10.13145/bacdive130850.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Nitrosomonadales
- family: Sulfuricellaceae
- genus: Sulfuriferula
- species: Sulfuriferula multivorans
- full scientific name: Sulfuriferula multivorans Watanabe et al. 2015
@ref: 22155
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Hydrogenophilales
family: Sulfuricellaceae
genus: Sulfuriferula
species: Sulfuriferula multivorans
full scientific name: Sulfuriferula multivorans Watanabe et al. 2015
strain designation: TTN
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 99.353 | |
69480 | 100 | negative |
colony morphology
- @ref: 22155
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 22155
- name: SULFURIFERULA MULTIVORANS MEDIUM (DSMZ Medium 1585)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1585
- composition: Name: SULFURIFERULA MULTIVORANS MEDIUM (DSMZ Medium 1585) Composition: Na2S2O3 x 5 H2O 10.0 g/l Na2HPO4 x 12 H2O 3.0 g/l KH2PO4 1.8 g/l (NH4)2SO4 0.1 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.04 g/l MnSO4 x 5 H2O 0.03 g/l FeCl3 x 6 H2O 0.03 g/l Distilled water
culture temp
- @ref: 22155
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.969 |
Isolation, sampling and environmental information
isolation
- @ref: 22155
- sample type: Thioploca sample from the sediment of a freshwater lake
- host species: Thioploca
- geographic location: Chitose, Lake Okotanpe
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Freshwater |
#Environmental | #Aquatic | #Lake (large) |
#Environmental | #Aquatic | #Sediment |
#Host | #Microbial | #Bacteria |
taxonmaps
- @ref: 69479
- File name: preview.99_95512.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_13394;97_16290;98_65529;99_95512&stattab=map
- Last taxonomy: Sulfuriferula multivorans subclade
- 16S sequence: LC005593
- Sequence Identity:
- Total samples: 636
- soil counts: 249
- aquatic counts: 338
- animal counts: 31
- plant counts: 18
Safety information
risk assessment
- @ref: 22155
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22155
- description: Sulfuriferula multivorans gene for 16S ribosomal RNA, partial sequence
- accession: LC005593
- length: 1462
- database: ena
- NCBI tax ID: 1559896
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sulfuriferula multivorans TTN | GCA_003851125 | scaffold | ncbi | 1559896 |
66792 | Sulfuriferula multivorans TTN | 2837050608 | draft | img | 1559896 |
GC content
- @ref: 22155
- GC-content: 63
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 88.906 | no |
flagellated | yes | 67.488 | no |
gram-positive | no | 98.394 | no |
anaerobic | no | 90.977 | no |
aerobic | no | 74.733 | no |
halophile | no | 96.354 | no |
spore-forming | no | 93.206 | no |
thermophile | no | 97.995 | yes |
glucose-util | no | 57.375 | no |
glucose-ferment | no | 88.912 | no |
External links
@ref: 22155
culture collection no.: DSM 29343, NBRC 110683
straininfo link
- @ref: 89337
- straininfo: 404318
literature
- topic: Phylogeny
- Pubmed-ID: 25701846
- title: Sulfuriferula multivorans gen. nov., sp. nov., isolated from a freshwater lake, reclassification of 'Thiobacillus plumbophilus' as Sulfuriferula plumbophilus sp. nov., and description of Sulfuricellaceae fam. nov. and Sulfuricellales ord. nov.
- authors: Watanabe T, Kojima H, Fukui M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000129
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fresh Water/microbiology, Genes, Bacterial, Geologic Sediments/*microbiology, Japan, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thiobacillus/*classification/genetics/isolation & purification
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
22155 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29343 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29343) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
89337 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404318.1 |