Strain identifier

BacDive ID: 13083

Type strain: Yes

Species: Pseudomonas poae

Strain Designation: P527/13

Strain history: CIP <- 2003, U. Behrendt, Paulinenaue, Germany: strain P527/13

NCBI tax ID(s): 200451 (species)

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General

@ref: 5609

BacDive-ID: 13083

DSM-Number: 14936

keywords: aerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Pseudomonas poae P527/13 is an aerobe, mesophilic bacterium that was isolated from phyllosphere of grasses.

NCBI tax id

  • NCBI tax id: 200451
  • Matching level: species

strain history

<- U. Behrendt; P527/13
2003, U. Behrendt, Paulinenaue, Germany: strain P527/13

doi: 10.13145/bacdive13083.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas poae
  • full scientific name: Pseudomonas poae Behrendt et al. 2003

@ref: 5609

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas poae

full scientific name: Pseudomonas poae Behrendt et al. 2003

strain designation: P527/13

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5609REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)yeshttps://bacmedia.dsmz.de/medium/220aName: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Agar 15.0 g/l Peptone from casein 15.0 g/l NaCl 5.0 g/l Peptone from soymeal 5.0 g/l Distilled water
5609REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://bacmedia.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
36701MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
5609positivegrowth28mesophilic
36701positivegrowth30mesophilic
59222positivegrowth21-28

Physiology and metabolism

oxygen tolerance

  • @ref: 59222
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
5609-----+--+++++-++-++-+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5609phyllosphere of grassesBrandenburg, PaulinenaueGermanyDEUEurope
59222Phyllosphere of grassesGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Safety information

risk assessment

  • @ref: 5609
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5609
  • description: Pseudomonas poae partial 16S rRNA gene, type strain DSM 14936T
  • accession: AJ492829
  • length: 1529
  • database: ena
  • NCBI tax ID: 200451

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas poae DSM 14936GCA_001439785contigncbi200451
66792Pseudomonas poae LMG 21465GCA_001730605contigncbi200451
66792Pseudomonas poae strain DSM 14936200451.7wgspatric200451
66792Pseudomonas poae strain LMG 21465200451.9wgspatric200451
66792Pseudomonas poae LMG 214652917137258draftimg200451
66792Pseudomonas poae DSM 149362667527928draftimg200451
66792Pseudomonas poae LMG 214652639762637draftimg200451

External links

@ref: 5609

culture collection no.: DSM 14936, LMG 21465, CCUG 51512, CCM 7506

straininfo link

@refpassport
20218http://www.straininfo.net/strains/340536
20218http://www.straininfo.net/strains/276956

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny13130034Fluorescent pseudomonads associated with the phyllosphere of grasses; Pseudomonas trivialis sp. nov., Pseudomonas poae sp. nov. and Pseudomonas congelans sp. nov.Behrendt U, Ulrich A, Schumann PInt J Syst Evol Microbiol10.1099/ijs.0.02567-02003DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fluorescence, Molecular Sequence Data, Phenotype, Phylogeny, Poaceae/*microbiology, Pseudomonas/classification/genetics/*isolation & purification/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species SpecificityGenetics
Phylogeny32228807Pseudomonas kitaguniensis sp. nov., a pathogen causing bacterial rot of Welsh onion in Japan.Sawada H, Fujikawa T, Nishiwaki Y, Horita HInt J Syst Evol Microbiol10.1099/ijsem.0.0041232020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Japan, Multilocus Sequence Typing, Nucleic Acid Hybridization, Onions/*microbiology, *Phylogeny, Plant Diseases/*microbiology, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny33270007Pseudomonas allii sp. nov., a pathogen causing soft rot of onion in Japan.Sawada H, Fujikawa T, Tsuji M, Satou MInt J Syst Evol Microbiol10.1099/ijsem.0.0045822020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Japan, Nucleic Acid Hybridization, Onions/*microbiology, *Phylogeny, Plant Diseases/*microbiology, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny33650945Pseudomonas cyclaminis sp. nov., a pathogen causing bacterial bud blight of cyclamen in Japan.Sawada H, Fujikawa T, Osada S, Satou MInt J Syst Evol Microbiol10.1099/ijsem.0.0047232021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5609Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14936)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14936
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
36701Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5775
59222Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 51512)https://www.ccug.se/strain?id=51512
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE