Strain identifier
BacDive ID: 130828
Type strain: 
Species: Mariniphaga anaerophila
Strain Designation: Fu11-5
Strain history: T. Iino Fu11-5.
NCBI tax ID(s): 1484053 (species)
version 8.1 (current version)
General
@ref: 22125
BacDive-ID: 130828
DSM-Number: 26910
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Mariniphaga anaerophila Fu11-5 is an anaerobe, mesophilic bacterium that was isolated from blackening tidal flat sediment taken from ca. 1m depth.
NCBI tax id
- NCBI tax id: 1484053
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22125 | <- T. Lino, JCM; Fu11-5 |
| 67770 | T. Iino Fu11-5. |
doi: 10.13145/bacdive130828.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Bacteroidia
- order: Bacteroidales
- family: Prolixibacteraceae
- genus: Mariniphaga
- species: Mariniphaga anaerophila
- full scientific name: Mariniphaga anaerophila Iino et al. 2014
@ref: 22125
domain: Bacteria
phylum: Bacteroidetes
class: Bacteroidia
order: Bacteroidales
family: Prolixibacteraceae
genus: Mariniphaga
species: Mariniphaga anaerophila
full scientific name: Mariniphaga anaerophila Iino et al. 2014
strain designation: Fu11-5
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92.316 | |
| 69480 | 100 | negative |
Culture and growth conditions
culture medium
- @ref: 22125
- name: PROLIXIBACTER MEDIUM GYSW (DSMZ Medium 1474)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1474
- composition: Name: PROLIXIBACTER MEDIUM GYSW (DSMZ Medium 1474) Composition: NaHCO3 2.52 g/l D-Glucose 1.8 g/l Yeast extract 1.0 g/l NH4Cl 0.54 g/l Na2S x 9 H2O 0.5 g/l L-Cysteine HCl x H2O 0.5 g/l MgCl2 x 6 H2O 0.2 g/l KH2PO4 0.14 g/l Nitrilotriacetic acid 0.128 g/l FeCl3 x 6 H2O 0.0135 g/l NaCl 0.01 g/l NiCl2 x 6 H2O 0.0012 g/l CaCl2 x 2 H2O 0.001 g/l MnSO4 x H2O 0.001 g/l ZnCl2 0.001 g/l CuCl2 x 5 H2O 0.00025 g/l CoCl2 x 6 H2O 0.00024 g/l Na2MoO4 x 2 H2O 0.00024 g/l H3BO3 0.0001 g/l Pyridoxine hydrochloride 0.0001 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine HCl 5e-05 g/l (DL)-alpha-Lipoic acid 5e-05 g/l Na2WO4 4e-05 g/l Na2SeO3 x 5 H2O 4e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Resazurin 1e-06 g/l Vitamin B12 1e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22125 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 35 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 98.283
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 22125 | blackening tidal flat sediment taken from ca. 1m depth | Chiba Prefecture, Tokyo Bay, Futtsu | Japan | JPN | Asia |
| 67770 | Blackening sediment at a depth of approximately 100 cm on the Futtsu tidal flat in Tokyo Bay | Chiba | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Tidal flat |
| #Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_3368.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_149;96_1758;97_2103;98_2581;99_3368&stattab=map
- Last taxonomy: Mariniphaga anaerophila subclade
- 16S sequence: AB921558
- Sequence Identity:
- Total samples: 659
- soil counts: 84
- aquatic counts: 459
- animal counts: 71
- plant counts: 45
Safety information
risk assessment
- @ref: 22125
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22125
- description: Mariniphaga anaerophila gene for 16S ribosomal RNA, partial sequence
- accession: AB921558
- length: 1443
- database: ena
- NCBI tax ID: 1484053
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mariniphaga anaerophila strain DSM 26910 | 1484053.3 | wgs | patric | 1484053 |
| 66792 | Mariniphaga anaerophila DSM 26910 | 2695420943 | draft | img | 1484053 |
| 67770 | Mariniphaga anaerophila DSM 26910 | GCA_900129025 | scaffold | ncbi | 1484053 |
GC content
- @ref: 22125
- GC-content: 41.7
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 89.312 | no |
| gram-positive | no | 96.625 | no |
| anaerobic | yes | 71.712 | no |
| aerobic | no | 84.777 | no |
| halophile | no | 62.152 | no |
| spore-forming | no | 93.698 | no |
| glucose-util | yes | 90.679 | no |
| flagellated | no | 98.105 | no |
| thermophile | no | 96.108 | no |
| glucose-ferment | no | 53.95 | no |
External links
@ref: 22125
culture collection no.: DSM 26910, JCM 18693, NBRC 109408
straininfo link
- @ref: 89315
- straininfo: 405999
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25096325 | Description of Mariniphaga anaerophila gen. nov., sp. nov., a facultatively aerobic marine bacterium isolated from tidal flat sediment, reclassification of the Draconibacteriaceae as a later heterotypic synonym of the Prolixibacteraceae and description of the family Marinifilaceae fam. nov. | Iino T, Mori K, Itoh T, Kudo T, Suzuki KI, Ohkuma M | Int J Syst Evol Microbiol | 10.1099/ijs.0.066274-0 | 2014 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 26012581 | Mariniphaga sediminis sp. nov., isolated from coastal sediment. | Wang FQ, Shen QY, Chen GJ, Du ZJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.000354 | 2015 | Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22125 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26910 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26910) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 89315 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405999.1 |