Strain identifier

BacDive ID: 130827

Type strain: Yes

Species: Olsenella scatoligenes

Strain Designation: SK9K4

Culture col. no.: DSM 28304, JCM 19907

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21710

BacDive-ID: 130827

DSM-Number: 28304

keywords: 16S sequence, genome sequence, Bacteria, anaerobe, mesophilic

description: Olsenella scatoligenes SK9K4 is an anaerobe, mesophilic bacterium that was isolated from pig faeces.

strain history: <- B. B. Jensen, Dept. Animal Sci., Aarhus Univ., Denmark; SK9K4

doi: 10.13145/bacdive130827.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Coriobacteriia
  • order: Coriobacteriales
  • family: Atopobiaceae
  • genus: Olsenella
  • species: Olsenella scatoligenes
  • full scientific name: Olsenella scatoligenes Li et al. 2015

@ref: 21710

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Coriobacteriales

family: Atopobiaceae

genus: Olsenella

species: Olsenella scatoligenes

full scientific name: Olsenella scatoligenes Li et al. 2015

strain designation: SK9K4

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 21710
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium104.pdf

culture temp

  • @ref: 21710
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 21710
  • oxygen tolerance: anaerobe

compound production

@refcompound
21710methyl (chroman-4-on-2-yl)-acetate
21710p cresol

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
21710---+-++---+------+/-+-+/-+-+/-+/-+/-+/--+/-

Isolation, sampling and environmental information

isolation

  • @ref: 21710
  • sample type: pig faeces
  • geographic location: Aarhus University
  • country: Denmark
  • origin.country: DNK
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 21710
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21710
  • description: Olsenella scatoligenes strain SK9K4 16S ribosomal RNA gene, partial sequence
  • accession: JX905358
  • length: 1469
  • database: ena
  • NCBI tax ID: 1299998

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Olsenella scatoligenes SK9K4GCA_001494635contigncbi1299998
66792Olsenella scatoligenes strain SK9K41299998.3wgspatric1299998

GC content

  • @ref: 21710
  • GC-content: 62.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 21710

culture collection no.: DSM 28304, JCM 19907

Reference

@idauthorstitledoi/urlcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
21710Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28304Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28304)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes