Strain identifier

BacDive ID: 13082

Type strain: No

Species: Pseudomonas nitroreducens

Strain Designation: TA12-C

Strain history: <- T. Tralau, Univ. Manchester, United Kingdom; TA 12-C <- dto., Univ. Konstanz, Germany

NCBI tax ID(s): 46680 (species)

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General

@ref: 17331

BacDive-ID: 13082

DSM-Number: 23662

keywords: 16S sequence, Bacteria, mesophilic

description: Pseudomonas nitroreducens TA12-C is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 46680
  • Matching level: species

strain history

  • @ref: 17331
  • history: <- T. Tralau, Univ. Manchester, United Kingdom; TA 12-C <- dto., Univ. Konstanz, Germany

doi: 10.13145/bacdive13082.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas nitroreducens
  • full scientific name: Pseudomonas nitroreducens Iizuka and Komagata 1964 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Pseudomonas nitritireducens
    20215Pseudomonas multiresinivorans

@ref: 17331

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas nitroreducens

full scientific name: Pseudomonas nitroreducens Iizuka and Komagata 1964 emend. Lang et al. 2007

strain designation: TA12-C

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17331TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
17331LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://mediadive.dsmz.de/medium/381Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water

culture temp

  • @ref: 17331
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
17331+--+----+-----+++++++
17331+--+----+-----+++++++

Isolation, sampling and environmental information

isolation

  • @ref: 17331
  • sample type: soil
  • geographic location: Moorea, near Maapiti
  • country: French Polynesia
  • origin.country: PYF
  • continent: Australia and Oceania

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_295.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_203;97_221;98_250;99_295&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: HM219617
  • Sequence Identity:
  • Total samples: 5736
  • soil counts: 862
  • aquatic counts: 2237
  • animal counts: 2039
  • plant counts: 598

Safety information

risk assessment

  • @ref: 17331
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17331
  • description: Pseudomonas sp. TA12-C 16S ribosomal RNA gene, partial sequence
  • accession: HM219617
  • length: 1416
  • database: ena
  • NCBI tax ID: 871574

External links

@ref: 17331

culture collection no.: DSM 23662

straininfo link

  • @ref: 82292
  • straininfo: 401358

literature

  • topic: Metabolism
  • Pubmed-ID: 21204940
  • title: Why two are not enough: degradation of p-toluenesulfonate by a bacterial community from a pristine site in Moorea, French Polynesia.
  • authors: Tralau T, Yang EC, Tralau C, Cook AM, Kupper FC
  • journal: FEMS Microbiol Lett
  • DOI: 10.1111/j.1574-6968.2010.02207.x
  • year: 2011
  • mesh: Achromobacter denitrificans/genetics/*metabolism, Bacterial Proteins/genetics/metabolism, Benzenesulfonates/*metabolism, Biodegradation, Environmental, Molecular Sequence Data, Polynesia, Pseudomonas/genetics/*metabolism, Rhizobiaceae/genetics/*metabolism, Xenobiotics/*metabolism
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
17331Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23662)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23662
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82292Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401358.1StrainInfo: A central database for resolving microbial strain identifiers