Strain identifier

BacDive ID: 130810

Type strain: Yes

Species: Pseudochelatococcus lubricantis

Strain history: CIP <- 2014, P. Kämpfer, Giessen, Univ., Giessen, Germany: strain MPA 1113

NCBI tax ID(s): 1538102 (species)

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General

@ref: 22135

BacDive-ID: 130810

DSM-Number: 28761

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, coccus-shaped

description: Pseudochelatococcus lubricantis DSM 28761 is a mesophilic, Gram-negative, coccus-shaped bacterium that was isolated from coolant .

NCBI tax id

  • NCBI tax id: 1538102
  • Matching level: species

strain history

@refhistory
22135<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; MPA 1113 <- J. Kuever, Bremen Institute for Materials Testing
120660CIP <- 2014, P. Kämpfer, Giessen, Univ., Giessen, Germany: strain MPA 1113

doi: 10.13145/bacdive130810.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Beijerinckiaceae
  • genus: Pseudochelatococcus
  • species: Pseudochelatococcus lubricantis
  • full scientific name: Pseudochelatococcus lubricantis Kämpfer et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Qingshengfania soli

@ref: 22135

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Beijerinckiaceae

genus: Pseudochelatococcus

species: Pseudochelatococcus lubricantis

full scientific name: Pseudochelatococcus lubricantis Kämpfer et al. 2015 emend. Kämpfer et al. 2018

type strain: yes

Morphology

cell morphology

  • @ref: 120660
  • gram stain: negative
  • cell shape: coccus-shaped
  • motility: no

multimedia

  • @ref: 22135
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28761.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22135REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)yeshttps://mediadive.dsmz.de/medium/535bName: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water
120660CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 22135
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
22135coolant (metal working emulsion)Northern GermanyGermanyDEUEurope
120660Coolant lubricantGermanyDEUEurope2012

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination#Heavy metal
#Engineered#Industrial#Industrial production

taxonmaps

  • @ref: 69479
  • File name: preview.99_81422.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_19514;97_24213;98_56617;99_81422&stattab=map
  • Last taxonomy: Pseudochelatococcus lubricantis subclade
  • 16S sequence: KJ886939
  • Sequence Identity:
  • Total samples: 143
  • soil counts: 30
  • aquatic counts: 66
  • animal counts: 44
  • plant counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
221351Risk group (German classification)
1206601Risk group (French classification)

Sequence information

16S sequences

  • @ref: 22135
  • description: Pseudochelatococcus lubricantis strain MPA 1113 16S ribosomal RNA gene, partial sequence
  • accession: KJ886939
  • length: 1406
  • database: ena
  • NCBI tax ID: 1538102

GC content

  • @ref: 22135
  • GC-content: 58.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22135

culture collection no.: DSM 28761, CCM 8528, CIP 110802, LMG 28286, MPA 1113, CCUG 53391

straininfo link

  • @ref: 89298
  • straininfo: 398551

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25301542Pseudochelatococcus lubricantis gen. nov., sp. nov. and Pseudochelatococcus contaminans sp. nov. from coolant lubricants.Kampfer P, Glaeser SP, Graber M, Rabenstein A, Kuever J, Busse HJInt J Syst Evol Microbiol10.1099/ijs.0.067652-02014Bacterial Typing Techniques, Base Composition, Beijerinckiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, *Lubricants, Metallurgy, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/chemistry, Ubiquinone/chemistryGenetics
Phylogeny29757129Qingshengfania soli Zhang et al. 2015 is a later heterotypic synonym of Pseudochelatococcus lubricantis Kampfer et al. 2015.Kampfer P, Glaeser SP, Graber M, Rabenstein A, Kuever JInt J Syst Evol Microbiol10.1099/ijsem.0.0028172018Bacterial Typing Techniques, Base Composition, Beijerinckiaceae/*classification/genetics, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22135Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28761Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28761)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89298Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398551.1
120660Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110802Collection of Institut Pasteur (CIP 110802)