Strain identifier

BacDive ID: 130794

Type strain: Yes

Species: Aetherobacter rufus

Strain Designation: SBSr003

Strain history: <- M. Stadler, InterMed Discovery GmbH; SBSr003 <- R. Garcia, Univ. Saarland, Germany

NCBI tax ID(s): 888831 (species)

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General

@ref: 21853

BacDive-ID: 130794

DSM-Number: 24628

keywords: 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Aetherobacter rufus SBSr003 is an aerobe, psychrophilic, Gram-negative bacterium that forms circular colonies and was isolated from dried soil with decaying plant material.

NCBI tax id

  • NCBI tax id: 888831
  • Matching level: species

strain history

  • @ref: 21853
  • history: <- M. Stadler, InterMed Discovery GmbH; SBSr003 <- R. Garcia, Univ. Saarland, Germany

doi: 10.13145/bacdive130794.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Myxococcales
  • family: Polyangiaceae
  • genus: Aetherobacter
  • species: Aetherobacter rufus
  • full scientific name: Aetherobacter rufus Garcia et al. 2016

@ref: 21853

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Polyangiaceae

genus: Aetherobacter

species: Aetherobacter rufus

full scientific name: Aetherobacter rufus Garcia et al. 2016

strain designation: SBSr003

type strain: yes

Morphology

cell morphology

  • @ref: 43768
  • gram stain: negative
  • cell length: 3-6 µm
  • cell width: 1-1.2 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: gliding

colony morphology

  • @ref: 43768
  • colony color: Whitish, centre transparent
  • colony shape: circular
  • medium used: Yeast agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43768Yeast agaryes
21853M1DG-MEDIUM (DSMZ Medium 1296)yeshttps://mediadive.dsmz.de/medium/1296Name: M1DG-MEDIUM (DSMZ Medium 1296) Composition: Agar 14.0 g/l Casitone 5.0 g/l Glucose 3.5 g/l MgSO4 x 7 H2O 2.0 g/l CaCl2 x 2 H2O 0.5 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43768positiveoptimum22-23psychrophilic
43768nogrowth26mesophilic
43768nogrowth37mesophilic
21853positivegrowth28mesophilic

culture pH

@refabilitytypepH
43768positivegrowth5-8
43768positiveoptimum6-7

Physiology and metabolism

oxygen tolerance

  • @ref: 43768
  • oxygen tolerance: aerobe

compound production

  • @ref: 21853
  • compound: aetheramide A and B

halophily

  • @ref: 43768
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-0.2 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4376862968cellulose-degradation
4376817029chitin-degradation
4376853424tween 20-hydrolysis
4376853426tween 80-hydrolysis
4376822599arabinose+growth
4376817057cellobiose+growth
4376828757fructose+growth
4376828260galactose+growth
4376817234glucose+growth
4376817716lactose+growth
4376817306maltose+growth
4376837684mannose+growth
4376830911sorbitol+growth
4376828017starch+growth
4376817992sucrose+growth
43768tryptone+growth
4376818222xylose+growth
43768casein+hydrolysis
437684853esculin+hydrolysis
43768skimmed milk+hydrolysis
4376828017starch+hydrolysis
4376837166xylan+hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistant
4376828669bacitracinyesyes50 µg/mL
437683542cephalothinyesyes50 µg/mL
4376824753hygromycinyesyes50 µg/mL
437687507neomycinyesyes50 µg/mL
4376859062polymyxinyesyes50 µg/mL
4376817076streptomycinyesyes50 µg/mL
4376845924trimethoprimyesyes50 µg/mL
4376828864tobramycinyesyes50 µg/mL
4376829693thiostreptonyesyes
4376871321fusidateyesyes
437686104kanamycinyesyes
437689215spectinomycinyesyes
4376827902tetracyclineyesyes
4376827701oxytetracyclineyesyes
437683393carbenicillinyesyes
4376828077rifampicinyesyes
4376828971ampicillinyesyes
437682790apramycinyesyes
4376817833gentamicinyesyes

enzymes

@refvalueactivityec
43768alkaline phosphatase+3.1.3.1
43768esterase (C 4)+
43768esterase Lipase (C 8)+
43768leucine arylamidase+3.4.11.1
43768valine arylamidase+
43768cystine arylamidase+3.4.11.3
43768alpha-chymotrypsin+3.4.21.1
43768acid phosphatase+3.1.3.2
43768naphthol-AS-BI-phosphohydrolase+
43768beta-galactosidase+3.2.1.23
43768lipase (C 14)+/-
43768beta-glucosidase-3.2.1.21
43768trypsin-3.4.21.4
43768alpha-galactosidase-3.2.1.22
43768beta-glucuronidase-3.2.1.31
43768alpha-glucosidase-3.2.1.20
43768N-acetyl-beta-glucosaminidase-3.2.1.52
43768alpha-mannosidase-3.2.1.24
43768alpha-fucosidase-3.2.1.51

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
21853dried soil with decaying plant material
43768Dried soil from the Saarland Centre for BiodocumentationLandsweiler-Reden, SaarlandGermanyDEUEurope2007

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Decomposing plant
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_13675.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_400;96_7021;97_8420;98_10343;99_13675&stattab=map
  • Last taxonomy: Aetherobacter rufus
  • 16S sequence: GU249610
  • Sequence Identity:
  • Total samples: 1674
  • soil counts: 1248
  • aquatic counts: 193
  • animal counts: 112
  • plant counts: 121

Safety information

risk assessment

  • @ref: 21853
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21853
  • description: Aetherobacter rufus strain SBSr003 16S ribosomal RNA gene, complete sequence
  • accession: GU249610
  • length: 1551
  • database: ena
  • NCBI tax ID: 888831

GC content

@refGC-contentmethod
4376868high performance liquid chromatography (HPLC)
2185368.0high performance liquid chromatography (HPLC)

External links

@ref: 21853

culture collection no.: DSM 24628, NCCB 100378

straininfo link

  • @ref: 89285
  • straininfo: 407149

literature

  • topic: Phylogeny
  • Pubmed-ID: 26637815
  • title: Aetherobacter fasciculatus gen. nov., sp. nov. and Aetherobacter rufus sp. nov., novel myxobacteria with promising biotechnological applications.
  • authors: Garcia R, Stadler M, Gemperlein K, Muller R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000813
  • year: 2015

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21853Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24628Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24628)
43768Ronald Garcia, Marc Stadler, Katja Gemperlein and Rolf MüllerAetherobacter fasciculatus gen. nov., sp. nov. and Aetherobacter rufus sp. nov., novel myxobacteria with promising biotechnological applications10.1099/ijsem.0.000813IJSEM 66: 928-938 201626637815
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89285Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407149.1