Strain identifier
BacDive ID: 130771
Type strain: 
Species: Luteimonas vadosa
Strain history: N. Tanaka Sd3-5.
NCBI tax ID(s): 1165507 (species)
version 8.1 (current version)
General
@ref: 21638
BacDive-ID: 130771
DSM-Number: 29392
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Luteimonas vadosa DSM 29392 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seashore sediment.
NCBI tax id
- NCBI tax id: 1165507
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21638 | <- JCM <- N. Tanaka, NODAI Culture Collection Center Tokyo University of Agriculture, Japan; Sd3-5 |
| 67770 | N. Tanaka Sd3-5. |
doi: 10.13145/bacdive130771.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Luteimonas
- species: Luteimonas vadosa
- full scientific name: Luteimonas vadosa Romanenko et al. 2013
@ref: 21638
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Lysobacteraceae, not assigned to order
family: Lysobacteraceae
genus: Luteimonas
species: Luteimonas vadosa
full scientific name: Luteimonas vadosa Romanenko et al. 2013
type strain: yes
Morphology
cell morphology
- @ref: 30732
- gram stain: negative
- cell length: 2.35 µm
- cell width: 0.45 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30732
- production: yes
multimedia
- @ref: 21638
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29392.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 21638
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21638 | positive | growth | 28 | mesophilic |
| 30732 | positive | growth | 05-39 | |
| 30732 | positive | optimum | 35 | mesophilic |
| 67770 | positive | growth | 35 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30732 | positive | growth | 06-09 | alkaliphile |
| 30732 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 30732
- oxygen tolerance: aerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30732 | NaCl | positive | growth | 0-4 % |
| 30732 | NaCl | positive | optimum | 0.75 % |
observation
| @ref | observation |
|---|---|
| 30732 | aggregates in clumps |
| 67770 | quinones: Q-10 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30732 | 29864 | mannitol | + | carbon source |
| 30732 | 30911 | sorbitol | + | carbon source |
| 30732 | 17992 | sucrose | + | carbon source |
| 30732 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30732 | acid phosphatase | + | 3.1.3.2 |
| 30732 | alkaline phosphatase | + | 3.1.3.1 |
| 30732 | gelatinase | + |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 21638 | seashore sediment | Sea of Japan | Russia | RUS | Asia | 42.6967 | 131.473 |
| 67770 | Sandy sediment from the Sea of Japan seashore | Russia | RUS |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Coast |
| #Environmental | #Terrestrial | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_34843.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_3881;97_20556;98_25716;99_34843&stattab=map
- Last taxonomy: Lysobacter
- 16S sequence: AB704915
- Sequence Identity:
- Total samples: 1487
- soil counts: 1069
- aquatic counts: 87
- animal counts: 105
- plant counts: 226
Safety information
risk assessment
- @ref: 21638
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21638
- description: Luteimonas vadosa gene for 16S ribosomal RNA, partial sequence
- accession: AB704915
- length: 1515
- database: ena
- NCBI tax ID: 1165507
External links
@ref: 21638
culture collection no.: DSM 29392, JCM 18392, NRIC 0881, KMM 9005
straininfo link
- @ref: 89268
- straininfo: 401755
literature
- topic: Phylogeny
- Pubmed-ID: 22771684
- title: Luteimonas vadosa sp. nov., isolated from seashore sediment.
- authors: Romanenko LA, Tanaka N, Svetashev VI, Kurilenko VV, Mikhailov VV
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.043273-0
- year: 2012
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, Oceans and Seas, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analysis, Water Microbiology, Xanthomonadaceae/*classification/genetics/isolation & purification
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21638 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29392 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29392) | |||
| 30732 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27063 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 89268 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401755.1 |