General

@ref: 21478

BacDive-ID: 130770

DSM-Number: 25526

keywords: 16S sequence, Bacteria, mesophilic

description: Arenimonas subflava PYM3-14 is a mesophilic bacterium that was isolated from water sample from river bank filtration well.

NCBI tax id

• NCBI tax id: 1122256
• Matching level: species

strain history

• @ref: 21478
• history: <- J. Makk, Eötvös Loránd Univ. Budapest, Hungary; PYM3-14

doi: 10.13145/bacdive130770.20241212.9.2

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Lysobacterales
• family: Lysobacteraceae
• genus: Arenimonas
• species: Arenimonas subflava
• full scientific name: Arenimonas subflava Makk et al. 2015

@ref: 21478

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lysobacteraceae, not assigned to order

family: Lysobacteraceae

genus: Arenimonas

species: Arenimonas subflava

full scientific name: Arenimonas subflava Makk et al. 2015

strain designation: PYM3-14

type strain: yes

Morphology

colony morphology

• @ref: 21478
• incubation period: 3-7 days

multimedia

• @ref: 21478
• multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25526.jpg
• intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

• @ref: 21478
• name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c)
• growth: yes
• link: https://mediadive.dsmz.de/medium/830c
• composition: Name: REACTIVATION WITH LIQUID MEDIUM 830 (DSMZ Medium 830c) Composition: Agar 15.0 g/l Yeast extract 0.5 g/l Proteose peptone 0.5 g/l Casamino acids 0.5 g/l Glucose 0.5 g/l Starch 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

• @ref: 21478
• growth: positive
• type: growth
• temperature: 28

Isolation, sampling and environmental information

isolation

• @ref: 21478
• sample type: water sample from river bank filtration well
• geographic location: Budapest, Sziget II/13 (47° 37' 39'' N, 19° 06' 13'' E)
• country: Hungary
• origin.country: HUN
• continent: Europe
• latitude: 47.6275
• longitude: 19.1036

isolation source categories

• Cat1: #Environmental
• Cat2: #Aquatic
• Cat3: #River (Creek)

taxonmaps

• @ref: 69479
• File name: preview.99_14959.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_7686;97_9232;98_11322;99_14959&stattab=map
• Last taxonomy: Arenimonas subflava subclade
• 16S sequence: HE616177
• Sequence Identity:
• Total samples: 14902
• soil counts: 4942
• aquatic counts: 7767
• animal counts: 726
• plant counts: 1467

Safety information

risk assessment

• @ref: 21478
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 21478
• description: Arenimonas subflava partial 16S rRNA gene, type strain PYM3-14T
• accession: HE616177
• length: 1467
• database: nuccore
• NCBI tax ID: 1122256

GC content

• @ref: 21478
• GC-content: 52.0
• method: high performance liquid chromatography (HPLC)

External links

@ref: 21478

culture collection no.: DSM 25526, NCAIM B 02508

straininfo link

• @ref: 89267
• straininfo: 402551

literature

• topic: Phylogeny
• Pubmed-ID: 25795065
• title: Arenimonas subflava sp. nov., isolated from a drinking water network, and emended description of the genus Arenimonas.
• authors: Makk J, Homonnay ZG, Keki Z, Nemes-Barnas K, Marialigeti K, Schumann P, Toth EM
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.000201
• year: 2015
• mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Drinking Water/*microbiology, Fatty Acids/chemistry, Hungary, Lysobacter/genetics, Molecular Sequence Data, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, Water Supply, Xanthomonadaceae/*classification/genetics/isolation & purification
• topic2: Genetics

Reference