Strain identifier

BacDive ID: 130763

Type strain: Yes

Species: Vibrio cholerae

Strain Designation: strain 3

Culture col. no.: CCUG 9118, DSM 100200, ATCC 14035, CCUG 9118, CIP 62.13, NCTC 8021, CECT 514

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General

@ref: 21977

BacDive-ID: 130763

DSM-Number: 100200

keywords: mesophilic, Bacteria, 16S sequence, genome sequence, antibiotic resistance

description: Vibrio cholerae strain 3 is a mesophilic bacterium that has multiple antibiotic resistances.

strain history: <- CIP <- NCTC <- H.J. Bensted, Public Health Laboratory Services, Colindale, London, United Kingdom; strain 3

doi: 10.13145/bacdive130763.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio cholerae
  • full scientific name: Vibrio cholerae Pacini 1854 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Vibrio albensis

@ref: 21977

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio cholerae

full scientific name: Vibrio cholerae Pacini 1854

strain designation: strain 3

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21977COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
21977TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
39747MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
21977positivegrowth28mesophilic
39747positivegrowth30mesophilic

Physiology and metabolism

antibiogram

@refmediumincubation temperatureoxygen conditionPenicillin Goxacillinampicillinticarcillinmezlocillincefalotincefazolincefotaximeaztreonamimipenemtetracyclinechloramphenicolgentamycinamikacinvancomycinerythromycinlincomycinofloxacinnorfloxacincolistinpipemidic acidnitrofurantoinbacitracinpolymyxin bkanamycinneomycindoxycyclineceftriaxoneclindamycinfosfomycinmoxifloxacinlinezolidnystatinquinupristin/dalfopristinteicoplaninpiperacillin/tazobactam
21977Mueller-Hinton Agar30aerob160203234-36302644342834-363824240228424612-143628014-1624-2620-22324210104028014032
21977Mueller-Hinton Agar30aerob160203032-343024423428363622220200404014343001624203438-401012-1436-383012-14161034
21977Mueller-Hinton Agar30aerob160203032-343024423428363622220200404014343001624203438-401012-1436-383012-14161034

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
21977+-+++---+++++---+---+
21977+-+++---+++++---+---+
21977+-+++---+++++---+---+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
21977+++---+++-+++++--++-+

Isolation, sampling and environmental information

isolation

  • @ref: 21977
  • geographic location: unknown?

Safety information

risk assessment

  • @ref: 21977
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21977
  • description: V.cholerae (CECT 514 T) 16S rRNA gene
  • accession: X76337
  • length: 1538
  • database: ena
  • NCBI tax ID: 666

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio cholerae ATCC 14035GCA_000621645scaffoldncbi1408478
66792Vibrio cholerae CECT 514GCA_013155105completencbi666
66792Vibrio cholerae ATCC 140351408478.3wgspatric1408478
66792Vibrio cholerae ATCC 140352556921658permanentimg1408478

External links

@ref: 21977

culture collection no.: CCUG 9118 A, DSM 100200, ATCC 14035, CCUG 9118, CIP 62.13, NCTC 8021, CECT 514

straininfo link

@refpassport
20218http://www.straininfo.net/strains/97285
20218http://www.straininfo.net/strains/156129
20218http://www.straininfo.net/strains/234997
20218http://www.straininfo.net/strains/97286

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
21977Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100200Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100200)
39747Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/9958
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes