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Strain identifier

BacDive ID: 130762

Type strain: Yes

Species: Vibrio cyclitrophicus

Strain Designation: P-2P44

Strain history: <- B. P. Hedlund, Univers. Washington; P-2P44

NCBI tax ID(s): 47951 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21976

BacDive-ID: 130762

DSM-Number: 14264

keywords: 16S sequence, Bacteria, aerobe, mesophilic

description: Vibrio cyclitrophicus P-2P44 is an aerobe, mesophilic bacterium that was isolated from creosote-contaminated marine sediment.

NCBI tax id

  • NCBI tax id: 47951
  • Matching level: species

strain history: <- B. P. Hedlund, Univers. Washington; P-2P44

doi: 10.13145/bacdive130762.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio cyclitrophicus
  • full scientific name: Vibrio cyclitrophicus corrig. Hedlund and Staley 2001
  • synonyms

    • @ref: 20215
    • synonym: Vibrio cyclotrophicus

@ref: 21976

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio cyclitrophicus

full scientific name: Vibrio cyclitrophicus Hedlund and Staley 2001

strain designation: P-2P44

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes88.051
6948099.05negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21976REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)yeshttps://mediadive.dsmz.de/medium/514cName: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
41187Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
21976positivegrowth28mesophilic
41187positivegrowth30mesophilic
61144positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 61144
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 96.9

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 90.895

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
21976creosote-contaminated marine sedimentEagle Harbor, Puget Sand, WashingtonUSAUSANorth America
61144Creosote-contaminated marine sedimentEagle HarborUSAUSANorth America1993

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_498.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_361;98_409;99_498&stattab=map
  • Last taxonomy: Vibrio
  • 16S sequence: AM162656
  • Sequence Identity:
  • Total samples: 8493
  • soil counts: 235
  • aquatic counts: 6823
  • animal counts: 1389
  • plant counts: 46

Safety information

risk assessment

  • @ref: 21976
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Vibrio cyclitrophicus strain LMG21359 16S ribosomal RNA gene, partial sequenceDQ4816101435ena47951
20218Vibrio 2P44 16S rRNA gene sequenceU579191461ena47951
21976Vibrio cyclitrophicus partial 16S rRNA gene, type strain LMG 21359TAM1626561365ena47951

Genome sequences

  • @ref: 66792
  • description: Vibrio cyclitrophicus LMG 21359
  • accession: GCA_024347435
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 47951

External links

@ref: 21976

culture collection no.: DSM 14264, ATCC 700982, CIP 106644, CCUG 56965, LMG 21359, KCTC 12925, NCIMB 13790

straininfo link

@refpassport
20218http://www.straininfo.net/strains/692227
20218http://www.straininfo.net/strains/118787
20218http://www.straininfo.net/strains/118789

literature

  • topic: Phylogeny
  • Pubmed-ID: 11211274
  • title: Vibrio cyclotrophicus sp. nov., a polycyclic aromatic hydrocarbon (PAH)-degrading marine bacterium.
  • authors: Hedlund BP, Staley JT
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-51-1-61
  • year: 2001
  • mesh: Bacterial Typing Techniques, Biodegradation, Environmental, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polycyclic Aromatic Hydrocarbons/*metabolism, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Vibrio/*classification/genetics/metabolism/ultrastructure, *Water Pollution, Chemical
  • topic2: Phenotype

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
21976Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-14264Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14264)
41187Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18797
61144Curators of the CCUGhttps://www.ccug.se/strain?id=56965Culture Collection University of Gothenburg (CCUG) (CCUG 56965)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes