Strain identifier

BacDive ID: 13076

Type strain: No

Species: Pseudomonas nitroreducens

Strain Designation: 926

Strain history: IAM 12573 <-- IFO 13302 ("Pseudomonas denitrificans") <-- Kyoto Univ. <-- ATCC 13867 <-- R. Hugh 926 <-- C. C. Delwiche.

NCBI tax ID(s): 46680 (species)

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General

@ref: 613

BacDive-ID: 13076

DSM-Number: 1650

keywords: genome sequence, Bacteria, aerobe, mesophilic, motile

description: Pseudomonas nitroreducens 926 is an aerobe, mesophilic, motile bacterium of the family Pseudomonadaceae.

NCBI tax id

  • NCBI tax id: 46680
  • Matching level: species

strain history

@refhistory
613<- H.G. Schlegel (Pseudomonas denitrificans) <- S. Fukui <- ATCC <- R. Hugh; 926 <- C. Delwiche
67770IAM 12573 <-- IFO 13302 ("Pseudomonas denitrificans") <-- Kyoto Univ. <-- ATCC 13867 <-- R. Hugh 926 <-- C. C. Delwiche.

doi: 10.13145/bacdive13076.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas nitroreducens
  • full scientific name: Pseudomonas nitroreducens Iizuka and Komagata 1964 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Pseudomonas nitritireducens
    20215Pseudomonas multiresinivorans

@ref: 613

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas nitroreducens

full scientific name: Pseudomonas nitroreducens Iizuka and Komagata 1964 emend. Lang et al. 2007

strain designation: 926

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes96.533
6948099.996negative

Culture and growth conditions

culture medium

  • @ref: 613
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
613positivegrowth28mesophilic
44422positivegrowth30-37mesophilic
67770positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 44422
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no99
69480no99.97

compound production

  • @ref: 613
  • compound: poly(ß-hydroxyalkanoic acids)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44422C12:04.412
    44422C14:03.214
    44422C15:00.715
    44422C16:030.616
    44422C17:00.217
    44422C18:00.218
    44422C10:0 3OH3.511.423
    44422C12:0 2OH5.613.178
    44422C12:0 3OH3.713.455
    44422C16:1 ω7c21.615.819
    44422C17:0 CYCLO4.716.888
    44422C18:1 ω7c /12t/9t20.517.824
    44422C18:1 ω9c0.217.769
    44422C18:2 ω6,9c/C18:0 ANTE0.417.724
    44422C19:0 CYCLO ω8c0.418.9
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
44422-+-+-+----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
613+--+-+--+-----+++/-++-+
44422+--+----+-----+++++-+
613+--+----+-----+++++-+

Safety information

risk assessment

  • @ref: 613
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas sp. ATCC 13867GCA_000349845completencbi1294143
66792Pseudomonas sp. ATCC 13867GCA_003417565contigncbi1294143
66792Pseudomonas denitrificans ATCC 138671294143.3completepatric1294143
66792Pseudomonas sp. ATCC 138671294143.12wgspatric1294143
66792Pseudomonas denitrificans ATCC 138672540341139completeimg1294143

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
motileyes90.712no
flagellatedyes86.086no
gram-positiveno98.489no
anaerobicno97.785yes
aerobicyes86.1no
halophileno85.023no
spore-formingno94.699no
glucose-utilyes87.097no
thermophileno99.763yes
glucose-fermentno90.094yes

External links

@ref: 613

culture collection no.: DSM 1650, ATCC 13867, CIP 104375, DSM 50405, NCIB 9496, CCUG 1783, IAM 12573, JCM 20650, IFO 13302, NBRC 13302, NCIMB 9496

straininfo link

  • @ref: 82286
  • straininfo: 4266

literature

  • topic: Metabolism
  • Pubmed-ID: 36430408
  • title: Shift of Choline/Betaine Pathway in Recombinant Pseudomonas for Cobalamin Biosynthesis and Abiotic Stress Protection.
  • authors: Balabanova L, Pentekhina I, Nedashkovskaya O, Degtyarenko A, Grigorchuk V, Yugay Y, Vasyutkina E, Kudinova O, Seitkalieva A, Slepchenko L, Son O, Tekutyeva L, Shkryl Y
  • journal: Int J Mol Sci
  • DOI: 10.3390/ijms232213934
  • year: 2022
  • mesh: *Betaine/metabolism, *Choline, Pseudomonas/genetics/metabolism, Stress, Physiological/genetics, Methyltransferases/metabolism, beta-Alanine, Vitamin B 12
  • topic2: Stress

Reference

@idauthorscataloguedoi/urltitle
613Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1650)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1650
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
44422Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 1783)https://www.ccug.se/strain?id=1783
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82286Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID4266.1StrainInfo: A central database for resolving microbial strain identifiers