Strain identifier

BacDive ID: 13074

Type strain: Yes

Species: Pseudomonas monteilii

Strain Designation: strain 1, 1

Strain history: CIP <- 1996, D. Izard, Lille Med. Univ., Lille, France: strain 1 <- J. Freney, E. Herriot Univ., Lyon, France

NCBI tax ID(s): 1215110 (strain), 76759 (species)

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General

@ref: 5238

BacDive-ID: 13074

DSM-Number: 14164

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, human pathogen

description: Pseudomonas monteilii strain 1 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from human bronchial aspirate.

NCBI tax id

NCBI tax idMatching level
76759species
1215110strain

strain history

@refhistory
5238<- CIP <- D. Izard, Med. Univ., Lille; strain 1 <- J. Freney, Herriot Univ., Lyon
67770IAM 15127 <-- CIP 104883 <-- D. Izard strain 1 <-- J. Freney.
121131CIP <- 1996, D. Izard, Lille Med. Univ., Lille, France: strain 1 <- J. Freney, E. Herriot Univ., Lyon, France

doi: 10.13145/bacdive13074.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas monteilii
  • full scientific name: Pseudomonas monteilii Elomari et al. 1997

@ref: 5238

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas monteilii

full scientific name: Pseudomonas monteilii Elomari et al. 1997

strain designation: strain 1, 1

type strain: yes

Morphology

cell morphology

  • @ref: 121131
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 121131
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
40667MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
5238TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yesName: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/535
121131CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
5238positivegrowth28mesophilic
40667positivegrowth30mesophilic
54427positivegrowth26-37mesophilic
67770positivegrowth30mesophilic
121131positivegrowth10-30
121131nogrowth5psychrophilic
121131nogrowth37mesophilic
121131nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
54427aerobe
121131obligate aerobe

compound production

  • @ref: 5238
  • compound: siderophore

halophily

  • @ref: 121131
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
12113116947citrate-carbon source
1211314853esculin-hydrolysis
12113117632nitrate-reduction
12113116301nitrite-reduction
12113115882phenol+degradation
12113117632nitrate-respiration

antibiotic resistance

  • @ref: 121131
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12113135581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6
121131oxidase+
121131beta-galactosidase-3.2.1.23
121131alcohol dehydrogenase+1.1.1.1
121131gelatinase-
121131amylase-
121131DNase-
121131caseinase-3.4.21.50
121131catalase+1.11.1.6
121131tween esterase-
121131lecithinase-
121131lipase-
121131lysine decarboxylase-4.1.1.18
121131ornithine decarboxylase-4.1.1.17
121131tryptophan deaminase-
121131urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121131-+++-+--+-++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
5238---+----++----++-++++

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121131++-----------------++----------+-----------++----++++++++---+++++--+--+++++++++++++++---+++++++++++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic locationisolation date
5238human bronchial aspirateFranceFRAEurope
54427Human bronchial aspirateFranceFRAEurope1990Lille
67770Clinical specimens
121131Human, Bronchial aspirateFranceFRAEuropeLille1990

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Airways
#Host Body Product#Fluids#Aspirate

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
5238yes, in single cases1Risk group (German classification)
1211311Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pseudomonas monteilii gene for 16S rRNA, strain: CIP 104883AB0214091503ena76759
20218Pseudomonas monteilii 16S ribosomal RNA gene, complete sequenceAF0644581517ena76759
20218Pseudomonas monteilii strain CIP 104883 16S ribosomal RNA gene, partial sequenceKC1363411331ena76759
20218Pseudomonas monteilii gene for 16S rRNA, partial sequence, strain: NBRC 103158AB6819661462ena76759

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas monteilii NBRC 103158 = DSM 141641215110.4wgspatric1215110
66792Pseudomonas monteilii NBRC 103158 = DSM 141641215110.3wgspatric1215110
66792Pseudomonas monteilii DSM 141642556921620draftimg1215110
66792Pseudomonas monteilii NBRC 1031582585427680draftimg1215110
67770Pseudomonas monteilii NBRC 103158 = DSM 14164GCA_000730605contigncbi1215110
67770Pseudomonas monteilii NBRC 103158 = DSM 14164GCA_000621245scaffoldncbi1215110

GC content

  • @ref: 67770
  • GC-content: 60
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes92.046no
gram-positiveno98.417no
anaerobicno98.2yes
aerobicyes95.695no
halophileno86.834no
spore-formingno95.144no
thermophileno99.88yes
glucose-utilyes92.042yes
flagellatedyes81.257no
glucose-fermentno89.347no

External links

@ref: 5238

culture collection no.: DSM 14164, ATCC 700476, CCUG 38736, CIP 104883, CCM 4844, JCM 21585, BCRC 17534, IAM 15127, LMG 21609, NBRC 103158, VTT E-052919

straininfo link

  • @ref: 82284
  • straininfo: 43945

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9226917Pseudomonas monteilii sp. nov., isolated from clinical specimens.Elomari M, Coroler L, Verhille S, Izard D, Leclerc HInt J Syst Bacteriol10.1099/00207713-47-3-8461997Bile/microbiology, Bronchoalveolar Lavage Fluid/microbiology, DNA, Bacterial/analysis, Feces/microbiology, Genotype, Humans, Nucleic Acid Hybridization, Phenotype, Pseudomonas/*classification/genetics/*isolation & purification, Pseudomonas Infections/*microbiology, Urine/microbiologyGenetics
Genetics17370070Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies.Ballerstedt H, Volkers RJ, Mars AE, Hallsworth JE, dos Santos VA, Puchalka J, van Duuren J, Eggink G, Timmis KN, de Bont JA, Wery JAppl Microbiol Biotechnol10.1007/s00253-007-0914-z2007*Genome, Bacterial, *Genomics, *Oligonucleotide Array Sequence Analysis, Phylogeny, Pseudomonas putida/*genetics, RNA/*geneticsPhylogeny
Metabolism29486129Pyrimidine nucleotide synthesis in the emerging pathogen Pseudomonas monteilii.Chunduru J, West TPCan J Microbiol10.1139/cjm-2018-00152018Aspartate Carbamoyltransferase/physiology, Glucose/metabolism, Orotate Phosphoribosyltransferase/physiology, Pseudomonas/*metabolism, Pyrimidine Nucleotides/*biosynthesis, Succinic Acid/metabolism, Uracil/metabolism
Genetics32974501High-quality draft genome sequences of Pseudomonas monteilii DSM 14164(T), Pseudomonas mosselii DSM 17497(T), Pseudomonas plecoglossicida DSM 15088(T), Pseudomonas taiwanensis DSM 21245(T) and Pseudomonas vranovensis DSM 16006(T): taxonomic considerations.Pena A, Busquets A, Gomila M, Mulet M, Gomila RM, Garcia-Valdes E, Reddy TBK, Huntemann M, Varghese N, Ivanova N, Chen IM, Goker M, Woyke T, Klenk HP, Kyrpides N, Lalucat JAccess Microbiol10.1099/acmi.0.0000672019

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5238Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14164)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14164
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40667Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16840
54427Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 38736)https://www.ccug.se/strain?id=38736
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
82284Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID43945.1StrainInfo: A central database for resolving microbial strain identifiers
121131Curators of the CIPCollection of Institut Pasteur (CIP 104883)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104883