Strain identifier
BacDive ID: 130732
Type strain: 
Species: Planobispora takensis
Strain Designation: A-T 7458
Strain history: <- C Suriyachadkun, BIOTEC Culture Collection (BCC); BCC 48396 <- S. Chunhametha
NCBI tax ID(s): 1367882 (species)
version 9.3 (current version)
General
@ref: 21729
BacDive-ID: 130732
DSM-Number: 46863
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Planobispora takensis A-T 7458 is a spore-forming, mesophilic bacterium that was isolated from soil collected from hill evergreen forest.
NCBI tax id
- NCBI tax id: 1367882
- Matching level: species
strain history
- @ref: 21729
- history: <- C Suriyachadkun, BIOTEC Culture Collection (BCC); BCC 48396 <- S. Chunhametha
doi: 10.13145/bacdive130732.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Planobispora
- species: Planobispora takensis
- full scientific name: Planobispora takensis Ngaemthao et al. 2014
@ref: 21729
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptosporangiaceae
genus: Planobispora
species: Planobispora takensis
full scientific name: Planobispora takensis Ngaemthao et al. 2014
strain designation: A-T 7458
type strain: yes
Morphology
cell morphology
- @ref: 125439
- gram stain: positive
- confidence: 99.4
multimedia
- @ref: 21729
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46863.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21729 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
| 21729 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 21729
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 98.2
Isolation, sampling and environmental information
isolation
- @ref: 21729
- sample type: soil collected from hill evergreen forest
- geographic location: Tak province
- country: Thailand
- origin.country: THA
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 21729
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21729
- description: Enterovirus A71 isolate JB143090173 capsid protein VP1 gene, partial cds
- accession: KC866732
- length: 891
- database: ena
- NCBI tax ID: 39054
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Planobispora takensis NBRC 109077 | GCA_016863195 | contig | ncbi | 1367882 |
| 66792 | Planobispora takensis strain NBRC 109077 | 1367882.3 | wgs | patric | 1367882 |
GC content
- @ref: 21729
- GC-content: 72.9
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 84.141 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.792 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 82.455 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.478 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 95.883 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 57.833 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 69.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 80.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 98.2 |
External links
@ref: 21729
culture collection no.: DSM 46863, BCC 48396, NBRC 109077
straininfo link
- @ref: 89235
- straininfo: 404584
literature
- topic: Phylogeny
- Pubmed-ID: 24408527
- title: Planobispora takensis sp. nov., isolated from soil.
- authors: Ngaemthao W, Suriyachadkun C, Chunhametha S, Niemhom N, Thawai C, Sanglier JJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.057968-0
- year: 2014
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Trees/microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21729 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46863 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46863) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89235 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404584.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |