Strain identifier

BacDive ID: 130724

Type strain: Yes

Species: Streptomyces seymenliensis

Strain Designation: B1041

Strain history: <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey; B1041 <- D. Tatar, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey

NCBI tax ID(s): 1302728 (species)

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General

@ref: 21957

BacDive-ID: 130724

DSM-Number: 42117

keywords: 16S sequence, Bacteria, mesophilic

description: Streptomyces seymenliensis B1041 is a mesophilic bacterium that was isolated from soil from a salt lake.

NCBI tax id

  • NCBI tax id: 1302728
  • Matching level: species

strain history

  • @ref: 21957
  • history: <- N. Sahin, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey; B1041 <- D. Tatar, Ondokuz Mayis Univ., Dept. of Biology, Kurupelit-Samsun, Turkey

doi: 10.13145/bacdive130724.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces seymenliensis
  • full scientific name: Streptomyces seymenliensis Tatar and Sahin 2015

@ref: 21957

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces seymenliensis

full scientific name: Streptomyces seymenliensis Tatar and Sahin 2015

strain designation: B1041

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69345Beige (1001), olive brown (8008)ISP 4
69345Beige (1001), light ivory (1015), olive brown (8008)ISP 2
69345Ivory (1014), khaki grey (7008)suter with tyrosine
69345Olive brown (8008)ISP 6
69345Olive brown (8008)suter without tyrosine
69345Olive brown (8008), sepia brown (8014)ISP 7
69345Sand yellow (1002), beige brown (8024)ISP 5
69345Signal yellow (1003), green brown (8000)ISP 3

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69345noAerial myceliumISP 2
69345noAerial myceliumISP 3
69345noAerial myceliumISP 4
69345noAerial myceliumISP 5
69345noAerial myceliumISP 6
69345noAerial myceliumISP 7
69345noAerial myceliumsuter with tyrosine
69345noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69345yesMelanin
69345yessoluble pigmentSand yellow (1002), beige (1001), grey beige (1019), brown beige (1011)

multimedia

@refmultimedia contentcaptionintellectual property rights
21957https://www.dsmz.de/microorganisms/photos/DSM_42117.jpgMedium 65 28°C© Leibniz-Institut DSMZ
69345DSM_42117_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69345DSM_42117_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21957GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21957ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

culture temp

  • @ref: 21957
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

halophily

  • @ref: 69345
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6934522599arabinose+growth
6934562968cellulose-growth
6934528757fructose+growth
6934517234glucose+growth
6934517268inositol+growth
6934537684mannose+growth
6934516634raffinose+/-growth
6934526546rhamnose+growth
6934517992sucrose+growth
6934518222xylose+/-growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69345---+-+++--+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69345++/-+/--++/-+/---+++/-+-+/-+/-++-

Isolation, sampling and environmental information

isolation

  • @ref: 21957
  • sample type: soil from a salt lake
  • geographic location: Ankara, Tuz Lake, Seymenli village
  • country: Turkey
  • origin.country: TUR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Terrestrial#Soil
#Condition#Saline

Safety information

risk assessment

  • @ref: 21957
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21957
  • description: Streptomyces seymenliensis strain B1041 16S ribosomal RNA gene, partial sequence
  • accession: KC560729
  • length: 1480
  • database: ena
  • NCBI tax ID: 1302728

GC content

  • @ref: 21957
  • GC-content: 70.4
  • method: fluorimetric

External links

@ref: 21957

culture collection no.: DSM 42117, KCTC 29245

straininfo link

  • @ref: 89230
  • straininfo: 396749

literature

  • topic: Phylogeny
  • Pubmed-ID: 25424909
  • title: Streptomyces seymenliensis sp. nov., isolated from soil.
  • authors: Tatar D, Sahin N
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-014-0339-5
  • year: 2014
  • mesh: Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Glycolipids/analysis, Lakes, Microscopy, Electron, Scanning, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification, Turkey, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21957Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42117Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42117)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69345Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%2042117.pdf
89230Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396749.1