Strain identifier
BacDive ID: 130719
Type strain: 
Species: Streptomyces halophytocola
Strain history: <- J. Nakagawa; NBRC 108770 <- S. Qin, Xuzhou Normal Univ.; KLBMP 1284
NCBI tax ID(s): 1181887 (species)
version 8.1 (current version)
General
@ref: 21952
BacDive-ID: 130719
DSM-Number: 42134
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, spiral-shaped
description: Streptomyces halophytocola DSM 42134 is an aerobe, spore-forming, mesophilic bacterium that was isolated from surface-sterilized stems of a coastal halophyte Tamarix chinensis Lour.
NCBI tax id
- NCBI tax id: 1181887
- Matching level: species
strain history
- @ref: 21952
- history: <- J. Nakagawa; NBRC 108770 <- S. Qin, Xuzhou Normal Univ.; KLBMP 1284
doi: 10.13145/bacdive130719.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces halophytocola
- full scientific name: Streptomyces halophytocola Qin et al. 2013
@ref: 21952
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces halophytocola
full scientific name: Streptomyces halophytocola Qin et al. 2013
type strain: yes
Morphology
cell morphology
- @ref: 30917
- gram stain: positive
- cell shape: spiral-shaped
pigmentation
- @ref: 30917
- production: yes
multimedia
- @ref: 21952
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42134.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 21952
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21952 | positive | growth | 28 | mesophilic |
| 30917 | positive | growth | 15-37 | |
| 30917 | positive | optimum | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30917 | positive | growth | 4.0-13.0 | alkaliphile |
| 30917 | positive | optimum | 7.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 30917
- oxygen tolerance: aerobe
spore formation
- @ref: 30917
- spore formation: yes
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30917 | NaCl | positive | growth | 0-10 % |
| 30917 | NaCl | positive | optimum | 3 % |
observation
- @ref: 30917
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30917 | 29016 | arginine | + | carbon source |
| 30917 | 17234 | glucose | + | carbon source |
| 30917 | 26546 | rhamnose | + | carbon source |
Isolation, sampling and environmental information
isolation
- @ref: 21952
- sample type: surface-sterilized stems of a coastal halophyte Tamarix chinensis Lour
- geographic location: Jiangsu province, Nantong
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Tree |
| #Host Body-Site | #Plant | #Stem (Branch) |
| #Host Body-Site | #Plant | #Sterilized plant part |
taxonmaps
- @ref: 69479
- File name: preview.99_7562.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_1755;97_4329;98_5542;99_7562&stattab=map
- Last taxonomy: Streptomyces
- 16S sequence: JQ819259
- Sequence Identity:
- Total samples: 2104
- soil counts: 626
- aquatic counts: 129
- animal counts: 1133
- plant counts: 216
Safety information
risk assessment
- @ref: 21952
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21952
- description: Streptomyces halophytocola strain KLBMP1284 16S ribosomal RNA gene, partial sequence
- accession: JQ819259
- length: 1453
- database: ena
- NCBI tax ID: 1181887
GC content
- @ref: 21952
- GC-content: 71.6
External links
@ref: 21952
culture collection no.: DSM 42134, KCTC 19890, NBRC 108770, KLBMP 1284
straininfo link
- @ref: 89226
- straininfo: 397539
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23291896 | Streptomyces halophytocola sp. nov., an endophytic actinomycete isolated from the surface-sterilized stems of a coastal halophyte Tamarix chinensis Lour. | Qin S, Bian GK, Tamura T, Zhang YJ, Zhang WD, Cao CL, Jiang JH | Int J Syst Evol Microbiol | 10.1099/ijs.0.047456-0 | 2013 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Endophytes/classification/genetics/isolation & purification, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, Plant Stems/microbiology, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Tamaricaceae/*microbiology | Enzymology |
| Phylogeny | 25488288 | Streptomyces xiaopingdaonensis sp. nov., a novel marine actinomycete isolated from the sediment of Xiaopingdao in Dalian, China. | Chen C, Feng WW, Qin S, Zhao XQ | Antonie Van Leeuwenhoek | 10.1007/s10482-014-0347-5 | 2014 | Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Microscopy, Electron, Scanning, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/*isolation & purification/physiology | Genetics |
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 21952 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42134 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42134) | |||
| 30917 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27247 | 28776041 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 89226 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397539.1 |