Strain identifier

BacDive ID: 130717

Type strain: Yes

Species: Mangrovactinospora gilvigrisea

Strain history: <- L.-H. Lee, Monash University Malaya, Malaysia; MUSC 26

NCBI tax ID(s): 1428644 (species)

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General

@ref: 21950

BacDive-ID: 130717

DSM-Number: 42173

keywords: 16S sequence, Bacteria

description: Mangrovactinospora gilvigrisea DSM 42173 is a bacterium that builds an aerial mycelium and was isolated from mangrove sediment.

NCBI tax id

  • NCBI tax id: 1428644
  • Matching level: species

strain history

  • @ref: 21950
  • history: <- L.-H. Lee, Monash University Malaya, Malaysia; MUSC 26

doi: 10.13145/bacdive130717.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Mangrovactinospora
  • species: Mangrovactinospora gilvigrisea
  • full scientific name: Mangrovactinospora gilvigrisea Madhaiyan et al. 2022

  • synonyms

    • @ref: 20215
    • synonym: Streptomyces gilvigriseus

@ref: 21950

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces gilvigriseus

full scientific name: Streptomyces gilvigriseus Ser et al. 2015

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69353Grey beige (1019)suter with tyrosine
69353Brown beige (1011), ivory (1014suter without tyrosine
69353Brown beige (1011)ISP 5
69353Ivory (1014), brown beige (1011)ISP 3
69353Ochre yellow (1024)ISP 2
69353Ochre yellow (1024)ISP 4
69353Pale brown (8025)ISP 7
69353Sand yellow (1002)ISP 6

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
69353yesAerial myceliumPure white (9010)ISP 2
69353yesAerial myceliumPure white (9010)ISP 3
69353noAerial myceliumISP 4
69353noAerial myceliumISP 5
69353noAerial myceliumISP 6
69353yesAerial myceliumTele grey 4 (7047)ISP 7
69353noAerial myceliumsuter with tyrosine
69353noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69353noMelanin
69353yessoluble pigmentIvory (1014), beige (1001), ocher brown (8001)

multimedia

@refmultimedia contentcaptionintellectual property rights
21950https://www.dsmz.de/microorganisms/photos/DSM_42173.jpgMedium 65 28°C© Leibniz-Institut DSMZ
69353DSM_42173_image3.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69353DSM_42173_image4.jpegPlates (65, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
21950GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
21950ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
21950STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

  • @ref: 21950
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

halophily

  • @ref: 69353
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6935322599arabinose+/-growth
6935362968cellulose-growth
6935328757fructose-growth
6935317234glucose+growth
6935317268inositol-growth
6935337684mannose+/-growth
6935316634raffinose+/-growth
6935326546rhamnose+growth
6935317992sucrose+/-growth
6935318222xylose+growth
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382trypsin-3.4.21.4
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase+3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69353+-++-++++----------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69353+++-+++/--+/-++++-+++++

Isolation, sampling and environmental information

isolation

  • @ref: 21950
  • sample type: mangrove sediment
  • geographic location: Pahang,Tanjung Lumpur
  • country: Malaysia
  • origin.country: MYS
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Mangrove
#Environmental#Aquatic#Sediment
#Host#Plants#Tree

taxonmaps

  • @ref: 69479
  • File name: preview.99_2984.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_1569;97_1873;98_2299;99_2984&stattab=map
  • Last taxonomy: Streptomyces gilvigriseus subclade
  • 16S sequence: KJ632660
  • Sequence Identity:
  • Total samples: 1105
  • soil counts: 642
  • aquatic counts: 83
  • animal counts: 324
  • plant counts: 56

Sequence information

16S sequences

  • @ref: 21950
  • description: Mangrovactinospora gilvigrisea strain MUSC 26 16S ribosomal RNA gene, partial sequence
  • accession: KJ632660
  • length: 1494
  • database: nuccore
  • NCBI tax ID: 1428644

GC content

  • @ref: 21950
  • GC-content: 74.6

External links

@ref: 21950

culture collection no.: DSM 42173, MCCC 1K00504, MUSC 26

straininfo link

  • @ref: 89224
  • straininfo: 400721

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25863667Streptomyces gilvigriseus sp. nov., a novel actinobacterium isolated from mangrove forest soil.Ser HL, Zainal N, Palanisamy UD, Goh BH, Yin WF, Chan KG, Lee LHAntonie Van Leeuwenhoek10.1007/s10482-015-0431-52015Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Malaysia, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/physiology, Vitamin K 2/analysis, WetlandsGenetics
Genetics29428207Genome sequence of Streptomyces gilvigriseus MUSC 26(T) isolated from mangrove forest.Ser HL, Tan WS, Mutalib NA, Yin WF, Chan KG, Goh BH, Lee LHBraz J Microbiol10.1016/j.bjm.2017.04.0122018Base Composition, Biological Products/metabolism, Computational Biology, *Environmental Microbiology, *Genome, Bacterial, Metabolic Networks and Pathways/genetics, Secondary Metabolism, Sequence Analysis, DNA, Streptomyces/*genetics/isolation & purification, WetlandsMetabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21950Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42173Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42173)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69353Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%2042173.pdf
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89224Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400721.1