Strain identifier
BacDive ID: 130712
Type strain: 
Species: Streptomyces cyslabdanicus
Strain Designation: K04-0144
Strain history: <- A. Matsumoto, Kitasato Universitiy. Tokyo; K04-0144
NCBI tax ID(s): 1470456 (species)
version 8.1 (current version)
General
@ref: 21945
BacDive-ID: 130712
DSM-Number: 42135
keywords: 16S sequence, Bacteria, mesophilic
description: Streptomyces cyslabdanicus K04-0144 is a mesophilic bacterium that was isolated from soil collected under a tree.
NCBI tax id
- NCBI tax id: 1470456
- Matching level: species
strain history
- @ref: 21945
- history: <- A. Matsumoto, Kitasato Universitiy. Tokyo; K04-0144
doi: 10.13145/bacdive130712.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces cyslabdanicus
- full scientific name: Streptomyces cyslabdanicus Také et al. 2015
@ref: 21945
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces cyslabdanicus
full scientific name: Streptomyces cyslabdanicus Také et al. 2015
strain designation: K04-0144
type strain: yes
Morphology
multimedia
- @ref: 21945
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42135.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 21945 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 21945 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
| 21945 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
- @ref: 21945
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
compound production
- @ref: 21945
- compound: cyslabdan
Isolation, sampling and environmental information
isolation
- @ref: 21945
- sample type: soil collected under a tree
- geographic location: Okinawa prefecture, Ishigaki Island
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Tree |
Safety information
risk assessment
- @ref: 21945
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21945
- description: Streptomyces cyslabdanicus gene for 16S ribosomal RNA, partial sequence
- accession: AB915216
- length: 1484
- database: ena
- NCBI tax ID: 1470456
GC content
- @ref: 21945
- GC-content: 73
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21945
culture collection no.: DSM 42135, NBRC 110081
straininfo link
- @ref: 89219
- straininfo: 404779
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25491896 | Streptomyces lactacystinicus sp. nov. and Streptomyces cyslabdanicus sp. nov., producing lactacystin and cyslabdan, respectively. | Take A, Matsumoto A, Omura S, Takahashi Y | J Antibiot (Tokyo) | 10.1038/ja.2014.162 | 2014 | Acetylcysteine/*analogs & derivatives/metabolism, Anti-Bacterial Agents/*metabolism, DNA, Bacterial/genetics, Diterpenes/*metabolism, Gene Expression Regulation, Bacterial/physiology, Phylogeny, Species Specificity, Streptomyces/*classification/*metabolism/ultrastructure | Metabolism |
| Metabolism | 26507838 | Biosynthesis of mercapturic acid derivative of the labdane-type diterpene, cyslabdan that potentiates imipenem activity against methicillin-resistant Staphylococcus aureus: cyslabdan is generated by mycothiol-mediated xenobiotic detoxification. | Ikeda H, Shin-Ya K, Nagamitsu T, Tomoda H | J Ind Microbiol Biotechnol | 10.1007/s10295-015-1694-6 | 2015 | Acetylcysteine/*analogs & derivatives/chemistry/metabolism/pharmacology, Amidohydrolases/genetics/metabolism, Biosynthetic Pathways/genetics, Cysteine/*metabolism, Diterpenes/*chemistry/*metabolism/*pharmacology, Glycopeptides/*metabolism, Imipenem/*pharmacology, Inactivation, Metabolic, Inositol/*metabolism, Methicillin-Resistant Staphylococcus aureus/*drug effects, Multigene Family/genetics, Mycelium/metabolism, Organophosphates/metabolism, Streptomyces/genetics/metabolism, Xenobiotics/*metabolism | Pathogenicity |
| Pathogenicity | 26833438 | New Approaches to Drug Discovery for Combating MRSA. | Tomoda H | Chem Pharm Bull (Tokyo) | 10.1248/cpb.c15-00743 | 2016 | Anti-Bacterial Agents/chemistry/isolation & purification/*pharmacology, *Drug Discovery, Humans, Methicillin-Resistant Staphylococcus aureus/*drug effects/growth & development, Microbial Sensitivity Tests, Molecular Structure, Streptococcal Infections/*drug therapy/*microbiology | Enzymology |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21945 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42135 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42135) | |
| 89219 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404779.1 |