Strain identifier
BacDive ID: 130691
Type strain: 
Species: Staphylococcus capitis
Strain Designation: G29
Strain history: <- European Space Agency, Noordwijk, Netherlands <- A. Auerbach, Univ. Regensburg, Germany; G29
NCBI tax ID(s): 29388 (species)
General
@ref: 21803
BacDive-ID: 130691
DSM-Number: 31028
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Staphylococcus capitis G29 is a mesophilic human pathogen that was isolated from cleanroom, wipe sample.
NCBI tax id
- NCBI tax id: 29388
- Matching level: species
strain history
- @ref: 21803
- history: <- European Space Agency, Noordwijk, Netherlands <- A. Auerbach, Univ. Regensburg, Germany; G29
doi: 10.13145/bacdive130691.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Staphylococcaceae
- genus: Staphylococcus
- species: Staphylococcus capitis
- full scientific name: Staphylococcus capitis Kloos and Schleifer 1975 (Approved Lists 1980)
@ref: 21803
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Staphylococcaceae
genus: Staphylococcus
species: Staphylococcus capitis
full scientific name: Staphylococcus capitis Kloos and Schleifer 1975
strain designation: G29
type strain: no
Culture and growth conditions
culture medium
- @ref: 21803
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 21803
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21803
- sample type: cleanroom, wipe sample
- geographic location: Göttingen, MPS
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Built environment
- Cat3: #Clean room
Safety information
risk assessment
- @ref: 21803
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Staphylococcus capitis subsp. capitis DSM 31028
- accession: GCA_025370135
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 72758
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 91.577 | no |
| flagellated | no | 93.066 | no |
| gram-positive | yes | 92.028 | no |
| anaerobic | no | 99.421 | no |
| aerobic | yes | 90.81 | no |
| halophile | yes | 95.358 | no |
| spore-forming | no | 92.846 | no |
| glucose-ferment | yes | 81.704 | no |
| thermophile | no | 99.831 | yes |
| glucose-util | yes | 90.471 | no |
External links
@ref: 21803
culture collection no.: DSM 31028
straininfo link
- @ref: 89198
- straininfo: 399475
literature
- topic: Stress
- Pubmed-ID: 36406458
- title: Phenotypic and genomic assessment of the potential threat of human spaceflight-relevant Staphylococcus capitis isolates under stress conditions.
- authors: Siems K, Runzheimer K, Rehm A, Schwengers O, Heidler von Heilborn D, Kaser L, Arndt F, Neidhofer C, Mengel JP, Parcina M, Lipski A, Hain T, Moeller R
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2022.1007143
- year: 2022
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21803 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-31028 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 31028) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 89198 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399475.1 |