Strain identifier
BacDive ID: 13069
Type strain:
Species: Pseudomonas brassicacearum
Strain Designation: G68
Strain history: <- J. T. van Dongen, MPI Golm <- S. Karojet and S. Kunz, Max Planck Inst. Molecular Plant Physiology, Golm, Germany; G68
NCBI tax ID(s): 930166 (species)
General
@ref: 18116
BacDive-ID: 13069
DSM-Number: 25827
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudomonas brassicacearum G68 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Gol-1.
NCBI tax id
- NCBI tax id: 930166
- Matching level: species
strain history
- @ref: 18116
- history: <- J. T. van Dongen, MPI Golm <- S. Karojet and S. Kunz, Max Planck Inst. Molecular Plant Physiology, Golm, Germany; G68
doi: 10.13145/bacdive13069.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas brassicacearum
- full scientific name: Pseudomonas brassicacearum Achouak et al. 2000
@ref: 18116
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas brassicacearum
full scientific name: Pseudomonas brassicacearum Achouak et al. 2000 emend. Ivanova et al. 2009
strain designation: G68
type strain: no
Morphology
multimedia
- @ref: 18116
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25827.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
18116 | REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) | yes | https://mediadive.dsmz.de/medium/1a | Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
18116 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf |
culture temp
- @ref: 18116
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | + | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | + | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | + | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | + | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18116 | +/- | - | - | + | - | - | + | - | + | + | + | + | + | - | + | + | - | + | + | - | + |
18116 | - | - | - | + | - | - | + | - | + | + | + | + | + | - | + | + | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 18116
- sample type: roots of Arabidopsis thaliana ecotype Gol-1
- host species: Arabidopsis thaliana
- geographic location: Golm
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_555.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_555&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: FN547411
- Sequence Identity:
- Total samples: 42314
- soil counts: 16904
- aquatic counts: 8731
- animal counts: 11521
- plant counts: 5158
Safety information
risk assessment
- @ref: 18116
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18116
- description: Pseudomonas sp. G68 partial 16S rRNA gene, strain G68
- accession: FN547411
- length: 1393
- database: ena
- NCBI tax ID: 671621
External links
@ref: 18116
culture collection no.: DSM 25827
straininfo link
- @ref: 82279
- straininfo: 404260
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
18116 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25827) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25827 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
68369 | Automatically annotated from API 20NE | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
82279 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID404260.1 | StrainInfo: A central database for resolving microbial strain identifiers |