Strain identifier

BacDive ID: 13069

Type strain: No

Species: Pseudomonas brassicacearum

Strain Designation: G68

Strain history: <- J. T. van Dongen, MPI Golm <- S. Karojet and S. Kunz, Max Planck Inst. Molecular Plant Physiology, Golm, Germany; G68

NCBI tax ID(s): 930166 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 18116

BacDive-ID: 13069

DSM-Number: 25827

keywords: 16S sequence, Bacteria, mesophilic

description: Pseudomonas brassicacearum G68 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Gol-1.

NCBI tax id

  • NCBI tax id: 930166
  • Matching level: species

strain history

  • @ref: 18116
  • history: <- J. T. van Dongen, MPI Golm <- S. Karojet and S. Kunz, Max Planck Inst. Molecular Plant Physiology, Golm, Germany; G68

doi: 10.13145/bacdive13069.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas brassicacearum
  • full scientific name: Pseudomonas brassicacearum Achouak et al. 2000

@ref: 18116

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas brassicacearum

full scientific name: Pseudomonas brassicacearum Achouak et al. 2000 emend. Ivanova et al. 2009

strain designation: G68

type strain: no

Morphology

multimedia

  • @ref: 18116
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25827.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18116REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://mediadive.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
18116TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf

culture temp

  • @ref: 18116
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
18116+/---+--+-+++++-++-++-+
18116---+--+-+++++-++-++-+

Isolation, sampling and environmental information

isolation

  • @ref: 18116
  • sample type: roots of Arabidopsis thaliana ecotype Gol-1
  • host species: Arabidopsis thaliana
  • geographic location: Golm
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

taxonmaps

  • @ref: 69479
  • File name: preview.99_555.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_555&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: FN547411
  • Sequence Identity:
  • Total samples: 42314
  • soil counts: 16904
  • aquatic counts: 8731
  • animal counts: 11521
  • plant counts: 5158

Safety information

risk assessment

  • @ref: 18116
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18116
  • description: Pseudomonas sp. G68 partial 16S rRNA gene, strain G68
  • accession: FN547411
  • length: 1393
  • database: ena
  • NCBI tax ID: 671621

External links

@ref: 18116

culture collection no.: DSM 25827

straininfo link

  • @ref: 82279
  • straininfo: 404260

Reference

@idauthorscataloguedoi/urltitle
18116Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25827)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25827
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82279Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID404260.1StrainInfo: A central database for resolving microbial strain identifiers