Strain identifier
BacDive ID: 130673
Type strain: 
Species: Sphingomonas sp.
Strain Designation: LnR5-44
Strain history: <- S.-T. Lee, Korean Advanced Institute of Science and Technology (KAIST), Daejeon, Korea <- W.-T. Im
NCBI tax ID(s): 28214 (species)
General
@ref: 21785
BacDive-ID: 130673
DSM-Number: 21012
keywords: 16S sequence, Bacteria, mesophilic
description: Sphingomonas sp. LnR5-44 is a mesophilic bacterium that was isolated from soil of ginseng field.
NCBI tax id
- NCBI tax id: 28214
- Matching level: species
strain history
- @ref: 21785
- history: <- S.-T. Lee, Korean Advanced Institute of Science and Technology (KAIST), Daejeon, Korea <- W.-T. Im
doi: 10.13145/bacdive130673.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Sphingomonadaceae
- genus: Sphingomonas
- species: Sphingomonas sp.
- full scientific name: Sphingomonas Yabuuchi et al. 1990
@ref: 21785
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Pseudomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas sp.
full scientific name: Sphingomonas sp.
strain designation: LnR5-44
type strain: no
Culture and growth conditions
culture medium
- @ref: 21785
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 21785
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21785
- sample type: soil of ginseng field
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
Sequence information
16S sequences
- @ref: 21785
- description: Sphingomonas sp. LnR5-44 16S ribosomal RNA gene, partial sequence
- accession: EU332828
- length: 1419
- database: ena
- NCBI tax ID: 490574
External links
@ref: 21785
culture collection no.: DSM 21012
straininfo link
- @ref: 89181
- straininfo: 403571
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21785 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21012 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21012) | |
| 89181 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403571.1 |