Strain identifier
BacDive ID: 130643
Type strain: 
Species: Litoreibacter meonggei
Strain Designation: MA1-1
Strain history: <- KCTC 23699 <- J.-H. Yoon, KRIBB; MA1-1
NCBI tax ID(s): 1049199 (species)
version 8.1 (current version)
General
@ref: 22079
BacDive-ID: 130643
DSM-Number: 29466
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, ovoid-shaped
description: Litoreibacter meonggei MA1-1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea squirt Halocynthia roretzi.
NCBI tax id
- NCBI tax id: 1049199
- Matching level: species
strain history
- @ref: 22079
- history: <- KCTC 23699 <- J.-H. Yoon, KRIBB; MA1-1
doi: 10.13145/bacdive130643.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Litoreibacter
- species: Litoreibacter meonggei
- full scientific name: Litoreibacter meonggei Kim et al. 2012
@ref: 22079
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Litoreibacter
species: Litoreibacter meonggei
full scientific name: Litoreibacter meonggei Kim et al. 2012
strain designation: MA1-1
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 30398 | negative | 1.5 µm | 0.8 µm | ovoid-shaped | no | |
| 69480 | negative | 99.998 |
colony morphology
| @ref | incubation period |
|---|---|
| 22079 | 1-2 days |
| 62639 | 2 days |
pigmentation
- @ref: 30398
- production: yes
Culture and growth conditions
culture medium
- @ref: 22079
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22079 | positive | growth | 25 | mesophilic |
| 30398 | positive | growth | 04-37 | |
| 30398 | positive | optimum | 25 | mesophilic |
| 62639 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30398 | positive | growth | 5.5-8 |
| 30398 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 30398 | aerobe |
| 62639 | aerobe |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 30398 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.997 |
halophily
- @ref: 30398
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 2 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30398 | 17306 | maltose | + | carbon source |
| 30398 | 18222 | xylose | + | carbon source |
| 30398 | 4853 | esculin | + | hydrolysis |
| 68369 | 25115 | malate | - | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 22079 | catalase | + | 1.11.1.6 |
| 22079 | cytochrome-c oxidase | + | 1.9.3.1 |
| 30398 | acid phosphatase | + | 3.1.3.2 |
| 30398 | alkaline phosphatase | + | 3.1.3.1 |
| 30398 | catalase | + | 1.11.1.6 |
| 30398 | gelatinase | + | |
| 30398 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22079 | - | - | - | - | - | + | - | + | +/- | - | +/- | +/- | +/- | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|---|
| 22079 | sea squirt Halocynthia roretzi | Halocynthia roretzi | South Sea | Republic of Korea | KOR | Asia | |
| 62639 | Sea squirt | South sea | Republic of Korea | KOR | Asia | 2009 |
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Tunicata
taxonmaps
- @ref: 69479
- File name: preview.99_71635.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_572;97_665;98_50213;99_71635&stattab=map
- Last taxonomy: Litoreibacter meonggei subclade
- 16S sequence: JN021667
- Sequence Identity:
- Total samples: 461
- soil counts: 3
- aquatic counts: 451
- animal counts: 7
Safety information
risk assessment
- @ref: 22079
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22079
- description: Litoreibacter meonggei strain MA1-1 16S ribosomal RNA gene, partial sequence
- accession: JN021667
- length: 1389
- database: ena
- NCBI tax ID: 1049199
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Litoreibacter meonggei DSM 29466 | GCA_003663885 | contig | ncbi | 1049199 |
| 66792 | Litoreibacter meonggei strain DSM 29466 | 1049199.3 | wgs | patric | 1049199 |
| 66792 | Litoreibacter meonggei DSM 29466 | 2681812954 | draft | img | 1049199 |
GC content
- @ref: 30398
- GC-content: 57.9
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 60.939 | yes |
| flagellated | no | 85.283 | no |
| gram-positive | no | 98.176 | no |
| anaerobic | no | 98.866 | yes |
| aerobic | yes | 95.544 | no |
| halophile | yes | 77.135 | no |
| spore-forming | no | 96.977 | yes |
| thermophile | no | 94.947 | yes |
| glucose-util | yes | 60.541 | no |
| glucose-ferment | no | 91.523 | yes |
External links
@ref: 22079
culture collection no.: DSM 29466, CCUG 61486, KCTC 23699, KCTC 23699T
straininfo link
- @ref: 89154
- straininfo: 401867
literature
- topic: Phylogeny
- Pubmed-ID: 21984668
- title: Description of Litoreibacter meonggei sp. nov., isolated from the sea squirt Halocynthia roretzi, reclassification of Thalassobacter arenae as Litoreibacter arenae comb. nov. and emended description of the genus Litoreibacter Romanenko et al. 2011.
- authors: Kim YO, Park S, Nam BH, Kang SJ, Hur YB, Kim DG, Oh TK, Yoon JH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.035113-0
- year: 2011
- mesh: Animals, Base Composition, DNA, Bacterial/genetics, Fatty Acids, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Sequence Analysis, DNA, Urochordata/*microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22079 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29466 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29466) | |||
| 30398 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 26735 | 28776041 | |
| 62639 | Curators of the CCUG | https://www.ccug.se/strain?id=61486 | Culture Collection University of Gothenburg (CCUG) (CCUG 61486) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 68369 | Automatically annotated from API 20NE | |||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 89154 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401867.1 |