Strain identifier
BacDive ID: 130641
Type strain:
Species: Celeribacter marinus
Strain history: <- NBRC <- J.-C. Cho, Inha University, Incheon, Korea; IMCC12053
NCBI tax ID(s): 1397108 (species)
General
@ref: 22076
BacDive-ID: 130641
DSM-Number: 100036
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Celeribacter marinus DSM 100036 is a mesophilic bacterium that was isolated from coastal seawater.
NCBI tax id
- NCBI tax id: 1397108
- Matching level: species
strain history
- @ref: 22076
- history: <- NBRC <- J.-C. Cho, Inha University, Incheon, Korea; IMCC12053
doi: 10.13145/bacdive130641.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Celeribacter
- species: Celeribacter marinus
- full scientific name: Celeribacter marinus Baek et al. 2014
@ref: 22076
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Celeribacter
species: Celeribacter marinus
full scientific name: Celeribacter marinus Baek et al. 2014
type strain: yes
Morphology
colony morphology
- @ref: 22076
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 22076
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 22076
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
22076 | catalase | + | 1.11.1.6 |
22076 | cytochrome-c oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
22076 | - | - | - | - | - | +/- | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 22076
- sample type: coastal seawater
- geographic location: Incheon, Jung-gu, Hang Dong
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Terrestrial | #Coast |
taxonmaps
- @ref: 69479
- File name: preview.99_4953.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_233;97_255;98_284;99_4953&stattab=map
- Last taxonomy: Celeribacter marinus
- 16S sequence: KF146343
- Sequence Identity:
- Total samples: 540
- soil counts: 15
- aquatic counts: 461
- animal counts: 62
- plant counts: 2
Safety information
risk assessment
- @ref: 22076
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22076
- description: Celeribacter marinus strain IMCC12053 16S ribosomal RNA gene, partial sequence
- accession: KF146343
- length: 1359
- database: ena
- NCBI tax ID: 1397108
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Celeribacter marinus DSM 100036 | GCA_900114275 | scaffold | ncbi | 1397108 |
66792 | Celeribacter marinus strain DSM 100036 | 1397108.8 | wgs | patric | 1397108 |
66792 | Celeribacter marinus DSM 100036 | 2693429905 | draft | img | 1397108 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 51.634 | no |
flagellated | no | 80.09 | no |
gram-positive | no | 98.555 | no |
anaerobic | no | 99.192 | no |
aerobic | yes | 86.665 | no |
halophile | yes | 63.853 | no |
spore-forming | no | 97.633 | no |
glucose-ferment | no | 90.292 | yes |
thermophile | no | 93.207 | yes |
glucose-util | yes | 83.711 | no |
External links
@ref: 22076
culture collection no.: DSM 100036, IMCC 12053, KACC 17482, NBRC 109702
straininfo link
- @ref: 89152
- straininfo: 397182
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 24425746 | Celeribacter marinus sp. nov., isolated from coastal seawater. | Baek K, Choi A, Kang I, Cho JC | Int J Syst Evol Microbiol | 10.1099/ijs.0.060673-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
Genetics | 26689483 | Complete genome sequence of Celeribacter marinus IMCC12053(T), the host strain of marine bacteriophage P12053L. | Yang JA, Kang I, Moon M, Ryu UC, Kwon KK, Cho JC, Oh HM | Mar Genomics | 10.1016/j.margen.2015.11.012 | 2015 | Aquatic Organisms, Bacteriophages/*physiology, DNA, Bacterial/genetics, Genome, Bacterial, Rhodobacteraceae/*genetics/*virology, Species Specificity | Phylogeny |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
22076 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100036 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100036) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
68369 | Automatically annotated from API 20NE | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
89152 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397182.1 |