Strain identifier

BacDive ID: 130641

Type strain: Yes

Species: Celeribacter marinus

Strain history: <- NBRC <- J.-C. Cho, Inha University, Incheon, Korea; IMCC12053

NCBI tax ID(s): 1397108 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22076

BacDive-ID: 130641

DSM-Number: 100036

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Celeribacter marinus DSM 100036 is a mesophilic bacterium that was isolated from coastal seawater.

NCBI tax id

  • NCBI tax id: 1397108
  • Matching level: species

strain history

  • @ref: 22076
  • history: <- NBRC <- J.-C. Cho, Inha University, Incheon, Korea; IMCC12053

doi: 10.13145/bacdive130641.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Celeribacter
  • species: Celeribacter marinus
  • full scientific name: Celeribacter marinus Baek et al. 2014

@ref: 22076

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Celeribacter

species: Celeribacter marinus

full scientific name: Celeribacter marinus Baek et al. 2014

type strain: yes

Morphology

colony morphology

  • @ref: 22076
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 22076
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 22076
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
22076catalase+1.11.1.6
22076cytochrome-c oxidase+1.9.3.1
68369gelatinase-
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
22076-----+/--+------------

Isolation, sampling and environmental information

isolation

  • @ref: 22076
  • sample type: coastal seawater
  • geographic location: Incheon, Jung-gu, Hang Dong
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Coast

taxonmaps

  • @ref: 69479
  • File name: preview.99_4953.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_233;97_255;98_284;99_4953&stattab=map
  • Last taxonomy: Celeribacter marinus
  • 16S sequence: KF146343
  • Sequence Identity:
  • Total samples: 540
  • soil counts: 15
  • aquatic counts: 461
  • animal counts: 62
  • plant counts: 2

Safety information

risk assessment

  • @ref: 22076
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22076
  • description: Celeribacter marinus strain IMCC12053 16S ribosomal RNA gene, partial sequence
  • accession: KF146343
  • length: 1359
  • database: ena
  • NCBI tax ID: 1397108

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Celeribacter marinus DSM 100036GCA_900114275scaffoldncbi1397108
66792Celeribacter marinus strain DSM 1000361397108.8wgspatric1397108
66792Celeribacter marinus DSM 1000362693429905draftimg1397108

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno51.634no
flagellatedno80.09no
gram-positiveno98.555no
anaerobicno99.192no
aerobicyes86.665no
halophileyes63.853no
spore-formingno97.633no
glucose-fermentno90.292yes
thermophileno93.207yes
glucose-utilyes83.711no

External links

@ref: 22076

culture collection no.: DSM 100036, IMCC 12053, KACC 17482, NBRC 109702

straininfo link

  • @ref: 89152
  • straininfo: 397182

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny24425746Celeribacter marinus sp. nov., isolated from coastal seawater.Baek K, Choi A, Kang I, Cho JCInt J Syst Evol Microbiol10.1099/ijs.0.060673-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Genetics26689483Complete genome sequence of Celeribacter marinus IMCC12053(T), the host strain of marine bacteriophage P12053L.Yang JA, Kang I, Moon M, Ryu UC, Kwon KK, Cho JC, Oh HMMar Genomics10.1016/j.margen.2015.11.0122015Aquatic Organisms, Bacteriophages/*physiology, DNA, Bacterial/genetics, Genome, Bacterial, Rhodobacteraceae/*genetics/*virology, Species SpecificityPhylogeny

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22076Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100036Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100036)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89152Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397182.1