Strain identifier

BacDive ID: 130634

Type strain: Yes

Species: Ruegeria litorea

Strain Designation: R37

Culture col. no.: DSM 29947, CECT 7639, KCTC 23353

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22057

BacDive-ID: 130634

DSM-Number: 29947

keywords: 16S sequence, genome sequence, Bacteria, mesophilic

description: Ruegeria litorea R37 is a mesophilic bacterium that was isolated from surface seawater.

strain history: <- CECT <- M. J. Pujalte, Univ. Valencia, Campus Burjasot, Spain; R37

doi: 10.13145/bacdive130634.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Rhodobacteraceae
  • genus: Ruegeria
  • species: Ruegeria litorea
  • full scientific name: Ruegeria litorea (Lucena et al. 2014) Wirth and Whitman 2018
  • synonyms

    • @ref: 20215
    • synonym: Tropicibacter litoreus

@ref: 22057

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Ruegeria

species: Ruegeria litorea

full scientific name: Ruegeria litorea (Lucena et al. 2014) Wirth and Whitman 2018

strain designation: R37

type strain: yes

Morphology

colony morphology

  • @ref: 22057
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 22057
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf

culture temp

  • @ref: 22057
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

enzymes

@refvalueactivityec
22057catalase+1.11.1.6
22057cytochrome-c oxidase+1.9.3.1

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
22057+-------------------

Isolation, sampling and environmental information

isolation

  • @ref: 22057
  • sample type: surface seawater
  • geographic location: Valencia, Malvarrosa Beach
  • country: Spain
  • origin.country: ESP
  • continent: Europe
  • latitude: 39.4747
  • longitude: -0.3231

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

Safety information

risk assessment

  • @ref: 22057
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22057
  • description: Tropicibacter litoreus R37 partial 16S rRNA gene, type strain R37T
  • accession: HE860713
  • length: 1399
  • database: ena
  • NCBI tax ID: 1200284

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ruegeria litorea R37 CECT 7639GCA_900172225contigncbi1200284
66792Tropicibacter litoreus R37 strain CECT 76391200284.4wgspatric1200284

External links

@ref: 22057

culture collection no.: DSM 29947, CECT 7639, KCTC 23353

straininfo link

@refpassport
20218http://www.straininfo.net/strains/893179
20218http://www.straininfo.net/strains/893180

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
22057Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29947Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29947)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes