Strain identifier

BacDive ID: 130632

Type strain: Yes

Species: Maritimibacter alkaliphilus

Strain history: CIP <- 2007, NBRC <- Y.J. Choo, Inha Univ., Inceon, Korea: strain HTCC2654

NCBI tax ID(s): 404236 (species)

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General

@ref: 22055

BacDive-ID: 130632

DSM-Number: 100037

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Maritimibacter alkaliphilus DSM 100037 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 404236
  • Matching level: species

strain history

@refhistory
22055<- NBRC <- Y.-J. Choo, Inha University, Incheon, Korea; HTCC2654
116246CIP <- 2007, NBRC <- Y.J. Choo, Inha Univ., Inceon, Korea: strain HTCC2654

doi: 10.13145/bacdive130632.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Maritimibacter
  • species: Maritimibacter alkaliphilus
  • full scientific name: Maritimibacter alkaliphilus Lee et al. 2007

@ref: 22055

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Maritimibacter

species: Maritimibacter alkaliphilus

full scientific name: Maritimibacter alkaliphilus Lee et al. 2007

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32097negative1.95 µm0.8 µmrod-shapedno
116246negativerod-shapedno

colony morphology

  • @ref: 22055
  • incubation period: 2-3 days

pigmentation

  • @ref: 32097
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22055BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
33316Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116246CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
22055positivegrowth30mesophilic
32097positivegrowth16-37
32097positiveoptimum30mesophilic
33316positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
32097positivegrowth4.0-12alkaliphile
32097positiveoptimum10

Physiology and metabolism

oxygen tolerance

  • @ref: 32097
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
32097NaClpositivegrowth0.5-7.5 %
32097NaClpositiveoptimum2.75 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3209730089acetate+carbon source
3209723652dextrin+carbon source
3209717234glucose+carbon source
3209729987glutamate+carbon source
3209728087glycogen+carbon source
3209717596inosine+carbon source
3209724996lactate+carbon source
3209717306maltose+carbon source
3209751850methyl pyruvate+carbon source
3209730031succinate+carbon source
3209717748thymidine+carbon source
3209753423tween 40+carbon source
3209753426tween 80+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
6836925115malate+assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
11624617632nitrate-reduction
11624616301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11624635581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
22055catalase+1.11.1.6
22055cytochrome-c oxidase+1.9.3.1
32097alkaline phosphatase+3.1.3.1
32097catalase+1.11.1.6
32097cytochrome oxidase+1.9.3.1
32097urease+3.5.1.5
68369gelatinase-
68369arginine dihydrolase-3.5.3.6
116246oxidase+
116246catalase+1.11.1.6
116246urease+3.5.1.5
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
22055--++-+/------+/---------
116246-+++-+-----+---+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
22055----++/---+-++-+--+/-+-+/-
22055--------+-++-+--+/-+-+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116246----------+-+-----------+--+/----+-------+/-------+/---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryisolation date
22055seawaterSargasso Sea, Bermuda Atlantic Time Series Station
116246Environment, SeawaterSargasso SeaAtlantic Ocean2001

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_4018.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2043;97_2464;98_3046;99_4018&stattab=map
  • Last taxonomy: Maritimibacter alkaliphilus subclade
  • 16S sequence: DQ915443
  • Sequence Identity:
  • Total samples: 86
  • soil counts: 9
  • aquatic counts: 73
  • animal counts: 2
  • plant counts: 2

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
220551Risk group (German classification)
1162461Risk group (French classification)

Sequence information

16S sequences

  • @ref: 22055
  • description: Maritimibacter alkaliphilus strain HTCC2654 16S ribosomal RNA gene, partial sequence
  • accession: DQ915443
  • length: 1407
  • database: ena
  • NCBI tax ID: 314271

Genome sequences

  • @ref: 66792
  • description: Maritimibacter alkaliphilus DSM 100037
  • accession: 2693429867
  • assembly level: draft
  • database: img
  • NCBI tax ID: 314271

GC content

  • @ref: 32097
  • GC-content: 61.7

External links

@ref: 22055

culture collection no.: DSM 100037, KCCM 42376, NBRC 102057, HTCC 2654, CIP 109640

straininfo link

  • @ref: 89144
  • straininfo: 293901

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17625211Maritimibacter alkaliphilus gen. nov., sp. nov., a genome-sequenced marine bacterium of the Roseobacter clade in the order Rhodobacterales.Lee K, Choo YJ, Giovannoni SJ, Cho JCInt J Syst Evol Microbiol10.1099/ijs.0.64960-02007Aerobiosis, Atlantic Ocean, Bacterial Typing Techniques, Base Composition, Chromatography, High Pressure Liquid, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Roseobacter/chemistry/*classification/genetics/*isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidGenetics
Phylogeny19126722Lutimaribacter saemankumensis gen. nov., sp. nov., isolated from a tidal flat of the Yellow Sea.Yoon JH, Kang SJ, Lee JS, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.000109-02009Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Korea, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/chemistry/*classification/genetics/*isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Species SpecificityPhenotype
Genetics20471590Biocatalytic resolution of glycidyl phenyl ether using a novel epoxide hydrolase from a marine bacterium, Maritimibacter alkaliphilus KCCM 42376 [corrected].Woo JH, Kang JH, Hwang YO, Cho JC, Kim SJ, Kang SGJ Biosci Bioeng10.1016/j.jbiosc.2009.11.0192010Alphaproteobacteria/*enzymology, Amino Acid Sequence, Biocatalysis, Epoxide Hydrolases/biosynthesis/genetics/*metabolism, Escherichia coli/genetics/metabolism, Genome, Bacterial, Glycerol/analogs & derivatives/analysis, Hydrolysis, Molecular Sequence Data, Phenyl Ethers/chemistry/*metabolismMetabolism
Genetics20729358Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera.Thrash JC, Cho JC, Ferriera S, Johnson J, Vergin KL, Giovannoni SJJ Bacteriol10.1128/JB.00873-102010Alphaproteobacteria/*genetics, DNA, Bacterial/genetics, *Genome, Bacterial, Molecular Sequence Data
Phylogeny26297482Maritimibacter lacisalsi sp. nov., isolated from a salt lake, and emended description of the genus Maritimibacter Lee et al. 2007.Zhong ZP, Liu Y, Zhou YG, Liu HC, Wang F, Liu ZPInt J Syst Evol Microbiol10.1099/ijsem.0.0004372015Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, *Salinity, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryGenetics
Phylogeny33770292Maritimibacter harenae sp. nov. and Sneathiella litorea sp. nov.: members of Alphaproteobacteria isolated from sea sand.Khan SA, Jung HS, Park HY, Jeon COAntonie Van Leeuwenhoek10.1007/s10482-021-01559-x2021Alphaproteobacteria, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhodobacteraceae/genetics, *Sand, Sequence Analysis, DNA, UbiquinoneTranscriptome
Phylogeny34522978Maritimibacter alexandrii sp. nov., a New Member of Rhodobacteraceae Isolated from Marine Phycosphere.Wang X, Ye Y, Xu FF, Duan YH, Xie PF, Yang Q, Zhang XLCurr Microbiol10.1007/s00284-021-02645-z2021Bacterial Typing Techniques, DNA, Bacterial/genetics, *Dinoflagellida, Fatty Acids, *Microbiota, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhodobacteraceae, Sequence Analysis, DNATranscriptome
Phylogeny35333151Maritimibacter dapengensis sp. nov., a poly-beta-hydroxyalkanoates-producing bacterium isolated from sediment of the Dapeng peninsula (Guangdong, China).Yu SY, Zheng WS, Huang YInt J Syst Evol Microbiol10.1099/ijsem.0.0053032022Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22055Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100037Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100037)
32097Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172834228776041
33316Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7406
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89144Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID293901.1
116246Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109640Collection of Institut Pasteur (CIP 109640)