Strain identifier

BacDive ID: 130611

Type strain: No

Species: Marinovum algicola

Strain Designation: DG898

Strain history: <- S. Pradella, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; DG898 <- D. H. Green, Scottish Association for Marine Science, Oban, United Kingdom

NCBI tax ID(s): 42444 (species)

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General

@ref: 21647

BacDive-ID: 130611

DSM-Number: 27768

keywords: 16S sequence, Bacteria, mesophilic

description: Marinovum algicola DG898 is a mesophilic bacterium that was isolated from Gymnodinium catenatum YC499B15.

NCBI tax id

  • NCBI tax id: 42444
  • Matching level: species

strain history

  • @ref: 21647
  • history: <- S. Pradella, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; DG898 <- D. H. Green, Scottish Association for Marine Science, Oban, United Kingdom

doi: 10.13145/bacdive130611.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Marinovum
  • species: Marinovum algicola
  • full scientific name: Marinovum algicola (Lafay et al. 1995) Martens et al. 2006
  • synonyms

    @refsynonym
    20215Roseobacter algicola
    20215Ruegeria algicola

@ref: 21647

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Marinovum

species: Marinovum algicola

full scientific name: Marinovum algicola (Lafay et al. 1995) Martens et al. 2006

strain designation: DG898

type strain: no

Morphology

colony morphology

  • @ref: 21647
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 21647
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 21647
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836917634D-glucose+assimilation
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
21647catalase+1.11.1.6
21647cytochrome-c oxidase+1.9.3.1
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
21647+----+/-+/-+++/-++++/----++-

Isolation, sampling and environmental information

isolation

  • @ref: 21647
  • sample type: Gymnodinium catenatum YC499B15
  • host species: Gymnodinium catenatum
  • geographic location: Yellow Sea
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Host
  • Cat2: #Protozoa
  • Cat3: #Dinoflagellate

taxonmaps

  • @ref: 69479
  • File name: preview.99_5000.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2447;97_2982;98_3737;99_5000&stattab=map
  • Last taxonomy: Marinovum algicola
  • 16S sequence: AY258086
  • Sequence Identity:
  • Total samples: 927
  • soil counts: 24
  • aquatic counts: 785
  • animal counts: 114
  • plant counts: 4

Safety information

risk assessment

  • @ref: 21647
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21647
  • description: Ruegeria sp. DG898 small subunit ribosomal RNA gene, partial sequence
  • accession: AY258086
  • length: 1354
  • database: ena
  • NCBI tax ID: 236090

External links

@ref: 21647

culture collection no.: DSM 27768

straininfo link

  • @ref: 89125
  • straininfo: 398937

literature

  • topic: Genetics
  • Pubmed-ID: 26079637
  • title: Ocean's Twelve: flagellar and biofilm chromids in the multipartite genome of Marinovum algicola DG898 exemplify functional compartmentalization.
  • authors: Frank O, Goker M, Pradella S, Petersen J
  • journal: Environ Microbiol
  • DOI: 10.1111/1462-2920.12947
  • year: 2015
  • mesh: Biofilms/*growth & development, Flagella/*genetics, Genome, Bacterial/*genetics, Molecular Sequence Data, Multigene Family, Oceans and Seas, Phylogeny, Plasmids/genetics, Replicon, Roseobacter/*genetics/metabolism
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21647Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27768Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27768)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89125Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398937.1