Strain identifier
BacDive ID: 130611
Type strain:
Species: Marinovum algicola
Strain Designation: DG898
Strain history: <- S. Pradella, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; DG898 <- D. H. Green, Scottish Association for Marine Science, Oban, United Kingdom
NCBI tax ID(s): 42444 (species)
General
@ref: 21647
BacDive-ID: 130611
DSM-Number: 27768
keywords: 16S sequence, Bacteria, mesophilic
description: Marinovum algicola DG898 is a mesophilic bacterium that was isolated from Gymnodinium catenatum YC499B15.
NCBI tax id
- NCBI tax id: 42444
- Matching level: species
strain history
- @ref: 21647
- history: <- S. Pradella, Leibniz-Institut DSMZ GmbH, Braunschweig, Germany; DG898 <- D. H. Green, Scottish Association for Marine Science, Oban, United Kingdom
doi: 10.13145/bacdive130611.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Marinovum
- species: Marinovum algicola
- full scientific name: Marinovum algicola (Lafay et al. 1995) Martens et al. 2006
synonyms
@ref synonym 20215 Roseobacter algicola 20215 Ruegeria algicola
@ref: 21647
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Marinovum
species: Marinovum algicola
full scientific name: Marinovum algicola (Lafay et al. 1995) Martens et al. 2006
strain designation: DG898
type strain: no
Morphology
colony morphology
- @ref: 21647
- incubation period: 2-3 days
Culture and growth conditions
culture medium
- @ref: 21647
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 21647
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
21647 | catalase | + | 1.11.1.6 |
21647 | cytochrome-c oxidase | + | 1.9.3.1 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21647 | + | - | - | - | - | +/- | +/- | + | + | +/- | + | + | + | +/- | - | - | - | + | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 21647
- sample type: Gymnodinium catenatum YC499B15
- host species: Gymnodinium catenatum
- geographic location: Yellow Sea
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
- Cat1: #Host
- Cat2: #Protozoa
- Cat3: #Dinoflagellate
taxonmaps
- @ref: 69479
- File name: preview.99_5000.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2447;97_2982;98_3737;99_5000&stattab=map
- Last taxonomy: Marinovum algicola
- 16S sequence: AY258086
- Sequence Identity:
- Total samples: 927
- soil counts: 24
- aquatic counts: 785
- animal counts: 114
- plant counts: 4
Safety information
risk assessment
- @ref: 21647
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21647
- description: Ruegeria sp. DG898 small subunit ribosomal RNA gene, partial sequence
- accession: AY258086
- length: 1354
- database: ena
- NCBI tax ID: 236090
External links
@ref: 21647
culture collection no.: DSM 27768
straininfo link
- @ref: 89125
- straininfo: 398937
literature
- topic: Genetics
- Pubmed-ID: 26079637
- title: Ocean's Twelve: flagellar and biofilm chromids in the multipartite genome of Marinovum algicola DG898 exemplify functional compartmentalization.
- authors: Frank O, Goker M, Pradella S, Petersen J
- journal: Environ Microbiol
- DOI: 10.1111/1462-2920.12947
- year: 2015
- mesh: Biofilms/*growth & development, Flagella/*genetics, Genome, Bacterial/*genetics, Molecular Sequence Data, Multigene Family, Oceans and Seas, Phylogeny, Plasmids/genetics, Replicon, Roseobacter/*genetics/metabolism
- topic2: Phylogeny
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21647 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-27768 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27768) | |
68369 | Automatically annotated from API 20NE | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
89125 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398937.1 |