Strain identifier

BacDive ID: 1306

Type strain: Yes

Species: Cytobacillus luteolus

Strain history: <- S.-K. Tang, YIM

NCBI tax ID(s): 682179 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16254

BacDive-ID: 1306

DSM-Number: 22388

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile

description: Cytobacillus luteolus DSM 22388 is a spore-forming, mesophilic, motile bacterium that was isolated from salt field.

NCBI tax id

  • NCBI tax id: 682179
  • Matching level: species

strain history

  • @ref: 16254
  • history: <- S.-K. Tang, YIM

doi: 10.13145/bacdive1306.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Cytobacillus
  • species: Cytobacillus luteolus
  • full scientific name: Cytobacillus luteolus (Shi et al. 2011) Gupta et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Bacillus luteolus

@ref: 16254

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Cytobacillus

species: Cytobacillus luteolus

full scientific name: Cytobacillus luteolus (Shi et al. 2011) Gupta et al. 2020

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes98.394
69480100positive

Culture and growth conditions

culture medium

  • @ref: 16254
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l MnSO4 0.01 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 16254
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

  • @ref: 16254
  • sample type: salt field
  • geographic location: Mokpo city
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2
#Environmental#Terrestrial
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_77596.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_686;97_9679;98_54211;99_77596&stattab=map
  • Last taxonomy: Bacillus luteolus
  • 16S sequence: GQ925365
  • Sequence Identity:
  • Total samples: 40
  • soil counts: 19
  • aquatic counts: 18
  • animal counts: 3

Safety information

risk assessment

  • @ref: 16254
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16254
  • description: Bacillus luteolus strain YIM 93174 16S ribosomal RNA gene, partial sequence
  • accession: GQ925365
  • length: 1486
  • database: ena
  • NCBI tax ID: 682179

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cytobacillus luteolus YIM 93174GCA_014982515contigncbi682179
66792Cytobacillus luteolus DSM 22388GCA_017873715contigncbi682179
66792Bacillus luteolus strain DSM 22388682179.4wgspatric682179
66792Bacillus luteolus strain YIM 93174682179.3wgspatric682179
66792Bacillus luteolus DSM 223882913399915draftimg682179

GC content

  • @ref: 16254
  • GC-content: 36.9
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
gram-positiveyes86.783no
anaerobicno98.198no
halophileyes68.517no
spore-formingyes94.228no
glucose-utilyes86.764no
thermophileno98.766no
flagellatedyes83.127no
motileyes88.617no
aerobicyes88.791no
glucose-fermentno93.937no

External links

@ref: 16254

culture collection no.: DSM 22388, CCTCC AA 208068, KCTC 13210, YIM 93174

straininfo link

  • @ref: 70957
  • straininfo: 401471

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20584813Bacillus luteolus sp. nov., a halotolerant bacterium isolated from a salt field.Shi R, Yin M, Tang SK, Lee JC, Park DJ, Zhang YJ, Kim CJ, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.021683-02010Aerobiosis, Amino Acids/analysis, Anti-Bacterial Agents/metabolism, Bacillus/*classification/genetics/*isolation & purification/physiology, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Drug Resistance, Bacterial, Fatty Acids/analysis, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/*metabolism, *Soil Microbiology, TemperatureMetabolism
Phylogeny32213250Bacillus salinus sp. nov., isolated from commercial solar salt.Kang H, Kang J, Cha I, Kim H, Joung Y, Jang TY, Joh KInt J Syst Evol Microbiol10.1099/ijsem.0.0040962020Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Salts, Seawater/microbiology, Sequence Analysis, DNA, Sodium Chloride/analysis, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny35550242Description and characterization of three endophytic Bacillaceae from the halophyte Suaeda salsa: Paenalkalicoccus suaedae gen. nov., sp. nov., Cytobacillus suaedae sp. nov., and Bacillus suaedae sp. nov.Xu L, Huang XX, Wang HT, Tang SK, Shen B, Sun JQInt J Syst Evol Microbiol10.1099/ijsem.0.0053372022*Bacillaceae/genetics, *Bacillus/genetics, Bacterial Typing Techniques, Base Composition, *Chenopodiaceae/microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants, Sequence Analysis, DNA, SoilTranscriptome

Reference

@idauthorscataloguedoi/urltitle
16254Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22388)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22388
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70957Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401471.1StrainInfo: A central database for resolving microbial strain identifiers