Strain identifier
BacDive ID: 1306
Type strain:
Species: Cytobacillus luteolus
Strain history: <- S.-K. Tang, YIM
NCBI tax ID(s): 682179 (species)
General
@ref: 16254
BacDive-ID: 1306
DSM-Number: 22388
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile
description: Cytobacillus luteolus DSM 22388 is a spore-forming, mesophilic, motile bacterium that was isolated from salt field.
NCBI tax id
- NCBI tax id: 682179
- Matching level: species
strain history
- @ref: 16254
- history: <- S.-K. Tang, YIM
doi: 10.13145/bacdive1306.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Cytobacillus
- species: Cytobacillus luteolus
- full scientific name: Cytobacillus luteolus (Shi et al. 2011) Gupta et al. 2020
synonyms
- @ref: 20215
- synonym: Bacillus luteolus
@ref: 16254
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Cytobacillus
species: Cytobacillus luteolus
full scientific name: Cytobacillus luteolus (Shi et al. 2011) Gupta et al. 2020
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 98.394 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 16254
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l MnSO4 0.01 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 16254
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 16254
- sample type: salt field
- geographic location: Mokpo city
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
Cat1 | Cat2 |
---|---|
#Environmental | #Terrestrial |
#Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_77596.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_686;97_9679;98_54211;99_77596&stattab=map
- Last taxonomy: Bacillus luteolus
- 16S sequence: GQ925365
- Sequence Identity:
- Total samples: 40
- soil counts: 19
- aquatic counts: 18
- animal counts: 3
Safety information
risk assessment
- @ref: 16254
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16254
- description: Bacillus luteolus strain YIM 93174 16S ribosomal RNA gene, partial sequence
- accession: GQ925365
- length: 1486
- database: ena
- NCBI tax ID: 682179
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Cytobacillus luteolus YIM 93174 | GCA_014982515 | contig | ncbi | 682179 |
66792 | Cytobacillus luteolus DSM 22388 | GCA_017873715 | contig | ncbi | 682179 |
66792 | Bacillus luteolus strain DSM 22388 | 682179.4 | wgs | patric | 682179 |
66792 | Bacillus luteolus strain YIM 93174 | 682179.3 | wgs | patric | 682179 |
66792 | Bacillus luteolus DSM 22388 | 2913399915 | draft | img | 682179 |
GC content
- @ref: 16254
- GC-content: 36.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
gram-positive | yes | 86.783 | no |
anaerobic | no | 98.198 | no |
halophile | yes | 68.517 | no |
spore-forming | yes | 94.228 | no |
glucose-util | yes | 86.764 | no |
thermophile | no | 98.766 | no |
flagellated | yes | 83.127 | no |
motile | yes | 88.617 | no |
aerobic | yes | 88.791 | no |
glucose-ferment | no | 93.937 | no |
External links
@ref: 16254
culture collection no.: DSM 22388, CCTCC AA 208068, KCTC 13210, YIM 93174
straininfo link
- @ref: 70957
- straininfo: 401471
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 20584813 | Bacillus luteolus sp. nov., a halotolerant bacterium isolated from a salt field. | Shi R, Yin M, Tang SK, Lee JC, Park DJ, Zhang YJ, Kim CJ, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.021683-0 | 2010 | Aerobiosis, Amino Acids/analysis, Anti-Bacterial Agents/metabolism, Bacillus/*classification/genetics/*isolation & purification/physiology, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Drug Resistance, Bacterial, Fatty Acids/analysis, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/*metabolism, *Soil Microbiology, Temperature | Metabolism |
Phylogeny | 32213250 | Bacillus salinus sp. nov., isolated from commercial solar salt. | Kang H, Kang J, Cha I, Kim H, Joung Y, Jang TY, Joh K | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004096 | 2020 | Bacillus/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Salts, Seawater/microbiology, Sequence Analysis, DNA, Sodium Chloride/analysis, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 35550242 | Description and characterization of three endophytic Bacillaceae from the halophyte Suaeda salsa: Paenalkalicoccus suaedae gen. nov., sp. nov., Cytobacillus suaedae sp. nov., and Bacillus suaedae sp. nov. | Xu L, Huang XX, Wang HT, Tang SK, Shen B, Sun JQ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005337 | 2022 | *Bacillaceae/genetics, *Bacillus/genetics, Bacterial Typing Techniques, Base Composition, *Chenopodiaceae/microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants, Sequence Analysis, DNA, Soil | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
16254 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22388) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22388 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
70957 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401471.1 | StrainInfo: A central database for resolving microbial strain identifiers |