Strain identifier
BacDive ID: 130593
Type strain: 
Species: Actinomycetospora rhizophila
Strain Designation: NEAU-B-8
Strain history: CGMCC 4.7134 <-- C. Liu; Northeast Agric. Univ., China; NEAU-B-8.
NCBI tax ID(s): 1416876 (species)
version 8.1 (current version)
General
@ref: 22062
BacDive-ID: 130593
DSM-Number: 46673
keywords: 16S sequence, Bacteria, mesophilic
description: Actinomycetospora rhizophila NEAU-B-8 is a mesophilic bacterium that was isolated from rhizosphere soil of a peace lily grown in a flowerpot.
NCBI tax id
- NCBI tax id: 1416876
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22062 | <- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-B-8 <- H. He |
| 67770 | CGMCC 4.7134 <-- C. Liu; Northeast Agric. Univ., China; NEAU-B-8. |
doi: 10.13145/bacdive130593.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinomycetospora
- species: Actinomycetospora rhizophila
- full scientific name: Actinomycetospora rhizophila He et al. 2015
@ref: 22062
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Actinomycetospora
species: Actinomycetospora rhizophila
full scientific name: Actinomycetospora rhizophila He et al. 2015
strain designation: NEAU-B-8
type strain: yes
Morphology
multimedia
- @ref: 22062
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46673.jpg
- caption: Medium 553 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 22062
- name: GPHF-MEDIUM (DSMZ Medium 553)
- growth: yes
- link: https://mediadive.dsmz.de/medium/553
- composition: Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22062 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 22062 | rhizosphere soil of a peace lily (Spathiphyllum kochii) grown in a flowerpot | Spathiphyllum kochii | Harbin, Heilongjiang Province (45° 45' N 126° 41' E) | China | CHN | Asia | 45.75 | 126.683 |
| 67770 | Rhizosphere soil of a peace lily (Spathi phyllum Kochii) from Heilongjiang Province | Spathi phyllum Kochii | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_126019.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_289;97_8757;98_10735;99_126019&stattab=map
- Last taxonomy: Actinomycetospora rhizophila
- 16S sequence: KF600710
- Sequence Identity:
- Total samples: 1390
- soil counts: 719
- aquatic counts: 156
- animal counts: 382
- plant counts: 133
Safety information
risk assessment
- @ref: 22062
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22062
- description: Actinomycetospora rhizophila strain NEAU-B-8 16S ribosomal RNA gene, partial sequence
- accession: KF600710
- length: 1526
- database: ena
- NCBI tax ID: 1416876
GC content
| @ref | GC-content | method |
|---|---|---|
| 22062 | 69.8 | |
| 67770 | 69.5-70.1 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 22062
culture collection no.: DSM 46673, CGMCC 4.7134, JCM 31765
straininfo link
- @ref: 89108
- straininfo: 397504
literature
- topic: Phylogeny
- Pubmed-ID: 25701847
- title: Actinomycetospora rhizophila sp. nov., an actinomycete isolated from rhizosphere soil of a peace lily (Spathi phyllum Kochii).
- authors: He H, Zhang Y, Ma Z, Li C, Liu C, Zhou Y, Li L, Wang X, Xiang W
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000131
- year: 2015
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Lilium/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22062 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46673 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46673) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89108 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397504.1 |