Strain identifier

BacDive ID: 130592

Type strain: Yes

Species: Saccharothrix tamanrassetensis

Strain Designation: SA198

Strain history: <- N. Sabaou, Ecole Normale Supérieure de Kouba, Alger, Algeria; Sa198 <- A. Zitouni et al.

NCBI tax ID(s): 1051531 (species)

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General

@ref: 21775

BacDive-ID: 130592

DSM-Number: 45947

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Saccharothrix tamanrassetensis SA198 is a spore-forming, mesophilic bacterium that was isolated from Saharan soil.

NCBI tax id

  • NCBI tax id: 1051531
  • Matching level: species

strain history

  • @ref: 21775
  • history: <- N. Sabaou, Ecole Normale Supérieure de Kouba, Alger, Algeria; Sa198 <- A. Zitouni et al.

doi: 10.13145/bacdive130592.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Saccharothrix
  • species: Saccharothrix tamanrassetensis
  • full scientific name: Saccharothrix tamanrassetensis Boubetra et al. 2015

@ref: 21775

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Saccharothrix

species: Saccharothrix tamanrassetensis

full scientific name: Saccharothrix tamanrassetensis Boubetra et al. 2015

strain designation: SA198

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no92.501
69480100positive

Culture and growth conditions

culture medium

  • @ref: 21775
  • name: ISP2 MEDIUM (DSMZ Medium 987)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/987
  • composition: Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

  • @ref: 21775
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

Isolation, sampling and environmental information

isolation

  • @ref: 21775
  • sample type: Saharan soil
  • geographic location: Hoggar region, Tamanrasset (22° 47' 0'' N 5° 31' 0'' E)
  • country: Algeria
  • origin.country: DZA
  • continent: Africa
  • latitude: 22.7833
  • longitude: 5.5167

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Environmental#Terrestrial#Desert
#Climate#Hot#Arid

Safety information

risk assessment

  • @ref: 21775
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
21775Saccharothrix tamanrassetensis strain SA198 16S ribosomal RNA gene, partial sequenceJN0363961426ena1051531
21775Saccharothrix tamanrassetensis strain SA198 16S ribosomal RNA gene, partial sequenceKJ5041761438ena1051531

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Saccharothrix tamanrassetensis CECT 8640GCA_014203665scaffoldncbi1051531
66792Saccharothrix tamanrassetensis strain CECT 86401051531.3wgspatric1051531
66792Saccharothrix tamanrassetensis CECT 86402863320540draftimg1051531

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno96.694no
gram-positiveyes89.619no
anaerobicno98.916no
aerobicyes89.94no
halophileno92.519no
spore-formingyes95.122no
glucose-utilyes89.118no
thermophileno98.304yes
motileno91.432no
glucose-fermentno93.16no

External links

@ref: 21775

culture collection no.: DSM 45947, CECT 8640

straininfo link

  • @ref: 89107
  • straininfo: 403232

literature

  • topic: Phylogeny
  • Pubmed-ID: 25667388
  • title: Saccharothrix tamanrassetensis sp. nov., an actinomycete isolated from Saharan soil.
  • authors: Boubetra D, Zitouni A, Bouras N, Schumann P, Sproer C, Klenk HP, Sabaou N
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000104
  • year: 2015
  • mesh: Actinobacteria/*classification/genetics/isolation & purification, Africa, Northern, Algeria, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21775Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45947Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45947)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89107Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403232.1