Strain identifier
BacDive ID: 130590
Type strain: 
Species: Saccharopolyspora halotolerans
Strain history: CCTCC AA 2013006 <-- L.-L. Zhang; Tarim Univ., China; TRM 45123.
NCBI tax ID(s): 1285924 (species)
version 8.1 (current version)
General
@ref: 21773
BacDive-ID: 130590
DSM-Number: 45990
keywords: 16S sequence, Bacteria, mesophilic
description: Saccharopolyspora halotolerans DSM 45990 is a mesophilic bacterium that was isolated from playa .
NCBI tax id
- NCBI tax id: 1285924
- Matching level: species
strain history
| @ref | history |
|---|---|
| 21773 | <- G. Feng, Guangdong Inst. Microbiology, Guangdong Academy Sci., China; TRM 45123 <- L. Lv, Tarim University, Alar, Xinjiang |
| 67770 | CCTCC AA 2013006 <-- L.-L. Zhang; Tarim Univ., China; TRM 45123. |
doi: 10.13145/bacdive130590.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Saccharopolyspora
- species: Saccharopolyspora halotolerans
- full scientific name: Saccharopolyspora halotolerans Lv et al. 2014
@ref: 21773
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Saccharopolyspora
species: Saccharopolyspora halotolerans
full scientific name: Saccharopolyspora halotolerans Lv et al. 2014
type strain: yes
Culture and growth conditions
culture medium
- @ref: 21773
- name: YIM MEDIUM + 10 % NACL (DSMZ Medium 1302)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1302
- composition: Name: YIM MEDIUM + 10 % NaCl (DSMZ Medium 1302) Composition: NaCl 100.0 g/l Agar 20.0 g/l Yeast extract 2.0 g/l CaCO3 1.0 g/l Glucose 1.0 g/l Tryptone 0.5 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 21773 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 21773 | playa (salt lake soil) | Xinjiang Province, Lop Nor (Luobupo) Lake (40° 20' N 90° 49' E) | China | CHN | Asia | 40.3333 | 90.8167 |
| 67770 | Playa sample from the Lop Nor Lake (a hypersaline lake) | Xinjiang Province, north-west China | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 21773
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21773
- description: Saccharopolyspora halotolerans strain TRM 45123 16S ribosomal RNA gene, partial sequence
- accession: KC295227
- length: 1497
- database: ena
- NCBI tax ID: 1285924
GC content
- @ref: 21773
- GC-content: 69.07
- method: high performance liquid chromatography (HPLC)
External links
@ref: 21773
culture collection no.: DSM 45990, CCTCC AA 2013006, TRM 45123, GIMCC 4.119, JCM 31077, CCTCC AB 2013006
straininfo link
- @ref: 89105
- straininfo: 403890
literature
- topic: Phylogeny
- Pubmed-ID: 25061064
- title: Saccharopolyspora halotolerans sp. nov., a halophilic actinomycete isolated from a hypersaline lake.
- authors: Lv LL, Zhang YF, Xia ZF, Zhang JJ, Zhang LL
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.063792-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Ecosystem, Fatty Acids/chemistry, Lakes/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Saccharopolyspora/*classification/genetics/isolation & purification, Salinity, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21773 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45990 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45990) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 89105 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403890.1 |