Strain identifier
BacDive ID: 130589
Type strain:
Species: Prauserella isguenensis
Strain Designation: H225
Strain history: <- N. Sabaou, LBSM, Ecole Normale Supérieure, Kouba, Alger, Algeria; H225
NCBI tax ID(s): 1470180 (species)
General
@ref: 21732
BacDive-ID: 130589
DSM-Number: 46664
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Prauserella isguenensis H225 is a mesophilic bacterium that was isolated from desert soil.
NCBI tax id
- NCBI tax id: 1470180
- Matching level: species
strain history
- @ref: 21732
- history: <- N. Sabaou, LBSM, Ecole Normale Supérieure, Kouba, Alger, Algeria; H225
doi: 10.13145/bacdive130589.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Prauserella
- species: Prauserella isguenensis
- full scientific name: Prauserella isguenensis Saker et al. 2015
@ref: 21732
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Prauserella
species: Prauserella isguenensis
full scientific name: Prauserella isguenensis Saker et al. 2015
strain designation: H225
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 93.144 | |
69480 | 100 | positive |
multimedia
- @ref: 21732
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46664.jpg
- caption: Medium 1504 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 21732
- name: CM-MEDIUM (DSMZ Medium 1504)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1504
- composition: Name: CM MEDIUM (DSMZ Medium 1504) Composition: NaCl 150.0 g/l Agar 20.0 g/l MgSO4 x 7 H2O 10.0 g/l Yeast extract 10.0 g/l Peptone 7.5 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O Distilled water
culture temp
- @ref: 21732
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 21732
- sample type: desert soil
- geographic location: Sahara, Mzab region, region of Ahbas (32° 27' N 3° 41' E) at Béni-Isguen (Ghardaia)
- country: Algeria
- origin.country: DZA
- continent: Africa
- latitude: 32.45
- longitude: 3.6833
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Desert |
#Environmental | #Terrestrial | #Soil |
#Condition | #Xerophilic |
taxonmaps
- @ref: 69479
- File name: preview.99_41937.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_3364;97_4129;98_30482;99_41937&stattab=map
- Last taxonomy: Prauserella
- 16S sequence: KJ504173
- Sequence Identity:
- Total samples: 322
- soil counts: 41
- aquatic counts: 15
- animal counts: 255
- plant counts: 11
Safety information
risk assessment
- @ref: 21732
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21732
- description: Prauserella isguenensis strain H225 16S ribosomal RNA gene, partial sequence
- accession: KJ504173
- length: 1441
- database: ena
- NCBI tax ID: 1470180
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Prauserella isguenensis CECT 8577 | GCA_014191605 | scaffold | ncbi | 1470180 |
66792 | Prauserella isguenensis strain CECT 8577 | 1470180.3 | wgs | patric | 1470180 |
66792 | Prauserella isguenensis CECT 8577 | 2824246350 | draft | img | 1470180 |
GC content
- @ref: 21732
- GC-content: 70.4
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 79 | no |
flagellated | no | 97.098 | no |
gram-positive | yes | 90.737 | no |
anaerobic | no | 98.648 | no |
aerobic | yes | 92.891 | no |
halophile | yes | 80.866 | no |
spore-forming | yes | 62.425 | no |
glucose-util | yes | 89.512 | no |
thermophile | no | 97.026 | yes |
motile | no | 90.496 | no |
glucose-ferment | no | 90.9 | no |
External links
@ref: 21732
culture collection no.: DSM 46664, CECT 8577
straininfo link
- @ref: 89104
- straininfo: 405355
literature
- topic: Phylogeny
- Pubmed-ID: 25713039
- title: Prauserella isguenensis sp. nov., a halophilic actinomycete isolated from desert soil.
- authors: Saker R, Bouras N, Meklat A, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HP
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000145
- year: 2015
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Algeria, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
21732 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46664 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46664) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
89104 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405355.1 |