Strain identifier
BacDive ID: 130588
Type strain: 
Species: Prauserella coralliicola
Strain history: <- J. Li, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China; SCSIO 11529
NCBI tax ID(s): 1401264 (species)
version 8.1 (current version)
General
@ref: 21731
BacDive-ID: 130588
DSM-Number: 45821
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Prauserella coralliicola DSM 45821 is a spore-forming, mesophilic bacterium that was isolated from stony coral Galaxea fascicularis.
NCBI tax id
- NCBI tax id: 1401264
- Matching level: species
strain history
- @ref: 21731
- history: <- J. Li, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China; SCSIO 11529
doi: 10.13145/bacdive130588.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Prauserella
- species: Prauserella coralliicola
- full scientific name: Prauserella coralliicola Wu et al. 2014
synonyms
- @ref: 20215
- synonym: Prauserella endophytica
@ref: 21731
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Prauserella
species: Prauserella coralliicola
full scientific name: Prauserella coralliicola Wu et al. 2014
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 91.379 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 21731
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 21731
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 96 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 21731
- sample type: stony coral Galaxea fascicularis
- host species: Galaxea fascicularis
- geographic location: Hainan province, Sanya, Luhuitou fringing reef (18° 13' N 109° 28' E) at a depth of 5 m
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 18.2167
- longitude: 109.467
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Cnidaria (Corals)
taxonmaps
- @ref: 69479
- File name: preview.99_64242.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_7302;97_8756;98_45421;99_64242&stattab=map
- Last taxonomy: Prauserella
- 16S sequence: KF670858
- Sequence Identity:
- Total samples: 326
- soil counts: 205
- aquatic counts: 10
- animal counts: 91
- plant counts: 20
Safety information
risk assessment
- @ref: 21731
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21731
- description: Prauserella coralliicola strain SCSIO 11529 16S ribosomal RNA gene, partial sequence
- accession: KF670858
- length: 1495
- database: ena
- NCBI tax ID: 1401264
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Prauserella coralliicola DSM 45821 | GCA_003202275 | contig | ncbi | 1401264 |
| 66792 | Prauserella coralliicola strain DSM 45821 | 1401264.3 | wgs | patric | 1401264 |
| 66792 | Prauserella coralliicola DSM 45821 | 2834462815 | draft | img | 1401264 |
GC content
- @ref: 21731
- GC-content: 70.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 96 | no |
| motile | no | 91.536 | no |
| gram-positive | yes | 91.069 | no |
| anaerobic | no | 98.984 | no |
| halophile | no | 51.892 | no |
| spore-forming | yes | 79.959 | no |
| glucose-util | yes | 88.479 | no |
| thermophile | no | 95.39 | no |
| aerobic | yes | 93.8 | no |
| flagellated | no | 96.927 | no |
| glucose-ferment | no | 93.213 | no |
External links
@ref: 21731
culture collection no.: DSM 45821, NBRC 109418, SCSIO 11529
straininfo link
- @ref: 89103
- straininfo: 403679
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25013227 | Prauserella coralliicola sp. nov., isolated from the coral Galaxea fascicularis. | Wu JF, Li J, You ZQ, Zhang S | Int J Syst Evol Microbiol | 10.1099/ijs.0.062679-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, Base Composition, China, Coral Reefs, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 25832628 | Prauserella endophytica sp. nov., an endophytic actinobacterium isolated from Tamarix taklamakanensis. | Liu JM, Habden X, Guo L, Tuo L, Jiang ZK, Liu SW, Liu XF, Chen L, Li RF, Zhang YQ, Sun CH | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0435-1 | 2015 | Actinobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Endophytes/*classification/genetics/*isolation & purification/physiology, Fatty Acids/analysis, Glycolipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tamaricaceae/*microbiology | Enzymology |
| Phylogeny | 28857021 | Prauserella oleivorans sp. nov., a halophilic and thermotolerant crude-oil-degrading actinobacterium isolated from an oil-contaminated mud pit. | Dastgheib SMM, Tirandaz H, Moshtaghi Nikou M, Ramezani M, Shavandi M, Amoozegar MA, Ventosa A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002124 | 2017 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Iran, Nucleic Acid Hybridization, Oil and Gas Fields/*microbiology, Peptidoglycan/chemistry, Petroleum/*microbiology, Petroleum Pollution, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soil Pollutants, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 31671051 | Prauserella flavalba sp. nov., a novel species of the genus Prauserella, isolated from alkaline soil. | Li Q, Ruckert C, Li G, Huang P, Schneider O, Kalinowski J, Jiang Y, Zotchev SB, Jiang C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003768 | 2020 | Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 34807814 | Prauserella cavernicola sp. nov., isolated from cave rock. | Suriyachadkun C, Ngaemthao W, Pujchakarn T, Mhuantong W, Chunhametha S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005107 | 2021 | Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Caves/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21731 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45821 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45821) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89103 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403679.1 |