Strain identifier

BacDive ID: 130584

Type strain: Yes

Species: Actinokineospora spheciospongiae

Strain history: <- N. Sabaou, Kouba,Alger,Algeria; PAL84

NCBI tax ID(s): 909613 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 21458

BacDive-ID: 130584

DSM-Number: 45961

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic

description: Actinokineospora spheciospongiae DSM 45961 is a spore-forming, mesophilic bacterium that was isolated from Saharan soil from a palm grove.

NCBI tax id

  • NCBI tax id: 909613
  • Matching level: species

strain history

  • @ref: 21458
  • history: <- N. Sabaou, Kouba,Alger,Algeria; PAL84

doi: 10.13145/bacdive130584.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinokineospora
  • species: Actinokineospora spheciospongiae
  • full scientific name: Actinokineospora spheciospongiae Kämpfer et al. 2015
  • synonyms

    • @ref: 20215
    • synonym: Actinokineospora mzabensis

@ref: 21458

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinokineospora

species: Actinokineospora mzabensis

full scientific name: Actinokineospora mzabensis Aouiche et al. 2015

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.892
69480100positive

Culture and growth conditions

culture medium

  • @ref: 21458
  • name: ISP2 MEDIUM (DSMZ Medium 987)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/987
  • composition: Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

  • @ref: 21458
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382lipase (C 14)-
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
21458-+-+/--+/-----+/-----+----

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
21458----++++++/--+-+/-+--+--

Isolation, sampling and environmental information

isolation

  • @ref: 21458
  • sample type: Saharan soil from a palm grove
  • geographic location: Ghardaia province, Mzab region, Béni-Isguen, Ntissa palm grove (32°27'52''N, 03°40'19''E, altitude, 468 m)
  • country: Algeria
  • origin.country: DZA
  • continent: Africa
  • latitude: 32.4644
  • longitude: 3.6719

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Grove (Orchard)
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Soil
#Climate#Hot#Arid

taxonmaps

  • @ref: 69479
  • File name: preview.99_5405.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_394;97_444;98_4031;99_5405&stattab=map
  • Last taxonomy: Actinokineospora
  • 16S sequence: KJ504177
  • Sequence Identity:
  • Total samples: 82
  • soil counts: 34
  • aquatic counts: 9
  • animal counts: 39

Safety information

risk assessment

  • @ref: 21458
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21458
  • description: Actinokineospora mzabensis strain PAL84 16S ribosomal RNA gene, partial sequence
  • accession: KJ504177
  • length: 1441
  • database: ena
  • NCBI tax ID: 1470177

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinokineospora spheciospongiae CECT 8578GCA_003182415scaffoldncbi909613
66792Actinokineospora mzabensis strain CECT 85781470177.3wgspatric1470177
66792Actinokineospora mzabensis CECT 85782770939579draftimg1470177

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.004no
gram-positiveyes89.21no
anaerobicno99.255no
halophileno87.245no
spore-formingyes95.996no
glucose-utilyes87.456no
aerobicyes91.639no
thermophileno98.901yes
motileno94.006no
glucose-fermentno94.526yes

External links

@ref: 21458

culture collection no.: DSM 45961, CECT 8578, PAL 84

straininfo link

  • @ref: 89100
  • straininfo: 403018

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25378048Actinokineospora mzabensis sp. nov., a novel actinomycete isolated from Saharan soil.Aouiche A, Bouras N, Mokrane S, Zitouni A, Schumann P, Sproer C, Sabaou N, Klenk HPAntonie Van Leeuwenhoek10.1007/s10482-014-0328-82014Actinobacteria/*classification/genetics/*isolation & purification/physiology, Africa, Northern, Algeria, Bacterial Typing Techniques, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Temperature, Vitamin K 2/analysisGenetics
Phylogeny32618556Actinokineospora pegani sp. nov., an endophytic actinomycete isolated from the surface-sterilized root of Peganum harmala L.Lei YJ, Xia ZF, Luo XX, Zhang LLInt J Syst Evol Microbiol10.1099/ijsem.0.0042992020Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Peganum/*microbiology, Phospholipids/chemistry, *Phylogeny, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21458Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45961Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45961)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89100Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403018.1