Strain identifier

BacDive ID: 130583

Type strain: Yes

Species: Actinoalloteichus hoggarensis

Strain Designation: AH97

Strain history: <- N. Sabaou, LBSM Ecole Normale Supérieure de Kouba, Alger, Algeria; AH97 <- A. Zitouni

NCBI tax ID(s): 1470176 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 21457

BacDive-ID: 130583

DSM-Number: 45943

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Actinoalloteichus hoggarensis AH97 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Saharan soil.

NCBI tax id

  • NCBI tax id: 1470176
  • Matching level: species

strain history

  • @ref: 21457
  • history: <- N. Sabaou, LBSM Ecole Normale Supérieure de Kouba, Alger, Algeria; AH97 <- A. Zitouni

doi: 10.13145/bacdive130583.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinoalloteichus
  • species: Actinoalloteichus hoggarensis
  • full scientific name: Actinoalloteichus hoggarensis Boudjelal et al. 2015

@ref: 21457

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinoalloteichus

species: Actinoalloteichus hoggarensis

full scientific name: Actinoalloteichus hoggarensis Boudjelal et al. 2015

strain designation: AH97

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotility
69480positive100
6948097.403no

multimedia

@refmultimedia contentintellectual property rightscaption
21457https://www.dsmz.de/microorganisms/photos/DSM_45943-1.jpg© Leibniz-Institut DSMZ
21457https://www.dsmz.de/microorganisms/photos/DSM_45943.jpg© Leibniz-Institut DSMZMedium 553 28°C

Culture and growth conditions

culture medium

  • @ref: 21457
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 21457
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes100
69480yes99.448

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
21457-+---++/---+/----+---+--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
21457-----+++------------

Isolation, sampling and environmental information

isolation

  • @ref: 21457
  • sample type: Saharan soil
  • geographic location: Hoggar Region, Tamanrasset (22° 47' 0'' N 5° 31' 0'' E)
  • country: Algeria
  • origin.country: DZA
  • continent: Africa
  • latitude: 22.7833
  • longitude: 5.5167

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Environmental#Terrestrial#Desert
#Climate#Hot#Arid

taxonmaps

  • @ref: 69479
  • File name: preview.99_2476.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1336;97_1586;98_1928;99_2476&stattab=map
  • Last taxonomy: Actinoalloteichus
  • 16S sequence: KJ504175
  • Sequence Identity:
  • Total samples: 3811
  • soil counts: 2648
  • aquatic counts: 370
  • animal counts: 458
  • plant counts: 335

Safety information

risk assessment

  • @ref: 21457
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 21457
  • description: Actinoalloteichus hoggarensis strain AH97 16S ribosomal RNA gene, partial sequence
  • accession: KJ504175
  • length: 1381
  • database: ena
  • NCBI tax ID: 1470176

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinoalloteichus hoggarensis DSM 45943GCA_002234535completencbi1470176
66792Actinoalloteichus hoggarensis CECT 8639GCA_014203625scaffoldncbi1470176
66792Actinoalloteichus hoggarensis strain CECT 86391470176.6wgspatric1470176
66792Actinoalloteichus hoggarensis strain DSM 459431470176.3completepatric1470176
66792Actinoalloteichus hoggarensis DSM 459432758568006completeimg1470176
66792Actinoalloteichus hoggarensis CECT 86392863314850draftimg1470176

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.014no
gram-positiveyes90.993no
anaerobicno98.836no
aerobicyes93.375no
halophileno69.353no
spore-formingyes84.999no
thermophileno98.314yes
glucose-utilyes85.815no
motileno92.295no
glucose-fermentno90.483yes

External links

@ref: 21457

culture collection no.: DSM 45943, CECT 8639

straininfo link

  • @ref: 89099
  • straininfo: 396705

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25825244Actinoalloteichus hoggarensis sp. nov., an actinomycete isolated from Saharan soil.Boudjelal F, Zitouni A, Bouras N, Schumann P, Sproer C, Sabaou N, Klenk HPInt J Syst Evol Microbiol10.1099/ijs.0.0002162015Actinomycetales/*classification/genetics/isolation & purification, Algeria, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryGenetics
Phylogeny28770445Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation.Nouioui I, Ruckert C, Willemse J, van Wezel GP, Klenk HP, Busche T, Kalinowski J, Bredholt H, Zotchev SBAntonie Van Leeuwenhoek10.1007/s10482-017-0920-92017Actinobacteria/chemistry/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Computational Biology/methods, Genes, Bacterial, Genome, Bacterial, Genomics/methods, High-Throughput Nucleotide Sequencing, Metabolomics/methods, Molecular Sequence Annotation, Multigene Family, Phenotype, Phylogeny, Porifera/*microbiology, Secondary Metabolism/geneticsGenetics

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
21457Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45943Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45943)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89099Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396705.1