Strain identifier
BacDive ID: 130583
Type strain:
Species: Actinoalloteichus hoggarensis
Strain Designation: AH97
Strain history: <- N. Sabaou, LBSM Ecole Normale Supérieure de Kouba, Alger, Algeria; AH97 <- A. Zitouni
NCBI tax ID(s): 1470176 (species)
General
@ref: 21457
BacDive-ID: 130583
DSM-Number: 45943
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Actinoalloteichus hoggarensis AH97 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Saharan soil.
NCBI tax id
- NCBI tax id: 1470176
- Matching level: species
strain history
- @ref: 21457
- history: <- N. Sabaou, LBSM Ecole Normale Supérieure de Kouba, Alger, Algeria; AH97 <- A. Zitouni
doi: 10.13145/bacdive130583.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Actinoalloteichus
- species: Actinoalloteichus hoggarensis
- full scientific name: Actinoalloteichus hoggarensis Boudjelal et al. 2015
@ref: 21457
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Actinoalloteichus
species: Actinoalloteichus hoggarensis
full scientific name: Actinoalloteichus hoggarensis Boudjelal et al. 2015
strain designation: AH97
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | motility |
---|---|---|---|
69480 | positive | 100 | |
69480 | 97.403 | no |
multimedia
@ref | multimedia content | intellectual property rights | caption |
---|---|---|---|
21457 | https://www.dsmz.de/microorganisms/photos/DSM_45943-1.jpg | © Leibniz-Institut DSMZ | |
21457 | https://www.dsmz.de/microorganisms/photos/DSM_45943.jpg | © Leibniz-Institut DSMZ | Medium 553 28°C |
Culture and growth conditions
culture medium
- @ref: 21457
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 21457
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 99.448 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68369 | gelatinase | + | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | - | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21457 | - | + | - | - | - | + | +/- | - | - | +/- | - | - | - | + | - | - | - | + | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
21457 | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
- @ref: 21457
- sample type: Saharan soil
- geographic location: Hoggar Region, Tamanrasset (22° 47' 0'' N 5° 31' 0'' E)
- country: Algeria
- origin.country: DZA
- continent: Africa
- latitude: 22.7833
- longitude: 5.5167
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Environmental | #Terrestrial | #Desert |
#Climate | #Hot | #Arid |
taxonmaps
- @ref: 69479
- File name: preview.99_2476.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1336;97_1586;98_1928;99_2476&stattab=map
- Last taxonomy: Actinoalloteichus
- 16S sequence: KJ504175
- Sequence Identity:
- Total samples: 3811
- soil counts: 2648
- aquatic counts: 370
- animal counts: 458
- plant counts: 335
Safety information
risk assessment
- @ref: 21457
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21457
- description: Actinoalloteichus hoggarensis strain AH97 16S ribosomal RNA gene, partial sequence
- accession: KJ504175
- length: 1381
- database: ena
- NCBI tax ID: 1470176
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Actinoalloteichus hoggarensis DSM 45943 | GCA_002234535 | complete | ncbi | 1470176 |
66792 | Actinoalloteichus hoggarensis CECT 8639 | GCA_014203625 | scaffold | ncbi | 1470176 |
66792 | Actinoalloteichus hoggarensis strain CECT 8639 | 1470176.6 | wgs | patric | 1470176 |
66792 | Actinoalloteichus hoggarensis strain DSM 45943 | 1470176.3 | complete | patric | 1470176 |
66792 | Actinoalloteichus hoggarensis DSM 45943 | 2758568006 | complete | img | 1470176 |
66792 | Actinoalloteichus hoggarensis CECT 8639 | 2863314850 | draft | img | 1470176 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
flagellated | no | 97.014 | no |
gram-positive | yes | 90.993 | no |
anaerobic | no | 98.836 | no |
aerobic | yes | 93.375 | no |
halophile | no | 69.353 | no |
spore-forming | yes | 84.999 | no |
thermophile | no | 98.314 | yes |
glucose-util | yes | 85.815 | no |
motile | no | 92.295 | no |
glucose-ferment | no | 90.483 | yes |
External links
@ref: 21457
culture collection no.: DSM 45943, CECT 8639
straininfo link
- @ref: 89099
- straininfo: 396705
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 25825244 | Actinoalloteichus hoggarensis sp. nov., an actinomycete isolated from Saharan soil. | Boudjelal F, Zitouni A, Bouras N, Schumann P, Sproer C, Sabaou N, Klenk HP | Int J Syst Evol Microbiol | 10.1099/ijs.0.000216 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Algeria, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry | Genetics |
Phylogeny | 28770445 | Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation. | Nouioui I, Ruckert C, Willemse J, van Wezel GP, Klenk HP, Busche T, Kalinowski J, Bredholt H, Zotchev SB | Antonie Van Leeuwenhoek | 10.1007/s10482-017-0920-9 | 2017 | Actinobacteria/chemistry/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Computational Biology/methods, Genes, Bacterial, Genome, Bacterial, Genomics/methods, High-Throughput Nucleotide Sequencing, Metabolomics/methods, Molecular Sequence Annotation, Multigene Family, Phenotype, Phylogeny, Porifera/*microbiology, Secondary Metabolism/genetics | Genetics |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
21457 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45943 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45943) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
68369 | Automatically annotated from API 20NE | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
89099 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396705.1 |