Strain identifier
BacDive ID: 130575
Type strain: 
Species: Pseudomonas guangdongensis
Strain Designation: SgZ-6
Strain history: <- KACC <- S. Zhou et al., Guangdong Institute of Eco-Environmental and Soil Science, Guangzhou, PR China
NCBI tax ID(s): 1245526 (species)
version 8.1 (current version)
General
@ref: 22025
BacDive-ID: 130575
DSM-Number: 100318
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Pseudomonas guangdongensis SgZ-6 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from electroactive biofilm of a lab scale microbial fuel cell.
NCBI tax id
- NCBI tax id: 1245526
- Matching level: species
strain history
- @ref: 22025
- history: <- KACC <- S. Zhou et al., Guangdong Institute of Eco-Environmental and Soil Science, Guangzhou, PR China
doi: 10.13145/bacdive130575.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas guangdongensis
- full scientific name: Pseudomonas guangdongensis Yang et al. 2013
@ref: 22025
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas guangdongensis
full scientific name: Pseudomonas guangdongensis Yang et al. 2013
strain designation: SgZ-6
type strain: yes
Morphology
cell morphology
- @ref: 31169
- gram stain: negative
- cell length: 1.6 µm
- cell width: 0.45 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 31169
- production: yes
Culture and growth conditions
culture medium
- @ref: 22025
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 22025 | positive | growth | 28 | mesophilic |
| 31169 | positive | growth | 10-42 | |
| 31169 | positive | optimum | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 31169 | positive | growth | 6.0-10.0 | alkaliphile |
| 31169 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 31169
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 31169
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31169 | NaCl | positive | growth | 0-5 % |
| 31169 | NaCl | positive | optimum | 1 % |
observation
- @ref: 31169
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31169 | 37054 | 3-hydroxybutyrate | + | carbon source |
| 31169 | 30089 | acetate | + | carbon source |
| 31169 | 16449 | alanine | + | carbon source |
| 31169 | 28087 | glycogen | + | carbon source |
| 31169 | 24996 | lactate | + | carbon source |
| 31169 | 25115 | malate | + | carbon source |
| 31169 | 18401 | phenylacetate | + | carbon source |
| 31169 | 26271 | proline | + | carbon source |
| 31169 | 17272 | propionate | + | carbon source |
| 31169 | 31011 | valerate | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31169 | catalase | + | 1.11.1.6 |
| 31169 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 22025
- sample type: electroactive biofilm of a lab scale microbial fuel cell
- geographic location: Guangdong
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Laboratory |
| #Environmental | #Biofilm |
| #Host | #Microbial |
Safety information
risk assessment
- @ref: 22025
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22025
- description: Pseudomonas guangdongensis strain SgZ-6 16S ribosomal RNA gene, partial sequence
- accession: JX274436
- length: 1442
- database: ena
- NCBI tax ID: 1245526
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomonas guangdongensis CCTCC AB 2012022 | 2667527223 | draft | img | 1245526 |
| 66792 | Pseudomonas guangdongensis CCTCC AB 2012022 | GCA_900105885 | chromosome | ncbi | 1245526 |
GC content
- @ref: 22025
- GC-content: 68.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 92.815 | no |
| glucose-ferment | no | 92.784 | no |
| flagellated | yes | 88.794 | no |
| gram-positive | no | 98.796 | yes |
| anaerobic | no | 94.985 | no |
| aerobic | yes | 76.901 | yes |
| halophile | no | 88.207 | yes |
| spore-forming | no | 93.337 | yes |
| thermophile | no | 98.933 | yes |
| glucose-util | no | 58.123 | no |
External links
@ref: 22025
culture collection no.: DSM 100318, CCTCC AB 2012022, KACC 16606
straininfo link
- @ref: 89092
- straininfo: 397483
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23918787 | Pseudomonas guangdongensis sp. nov., isolated from an electroactive biofilm, and emended description of the genus Pseudomonas Migula 1894. | Yang G, Han L, Wen J, Zhou S | Int J Syst Evol Microbiol | 10.1099/ijs.0.054676-0 | 2013 | Bacterial Typing Techniques, Base Composition, Bioelectric Energy Sources/*microbiology, *Biofilms, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
| Phylogeny | 36256565 | Pseudomonas oryzagri sp. nov., isolated from a rice field soil. | Huq MA, Lee SY, Ma J, Rahman MM, Rahman MS, Park JH, Akter S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005534 | 2022 | RNA, Ribosomal, 16S/genetics, *Oryza, Base Composition, Soil, DNA, Bacterial/genetics, Phylogeny, Agar, Sodium Chloride, Polysorbates, Catalase/genetics, Bacterial Typing Techniques, Sequence Analysis, DNA, Fatty Acids/chemistry, Pseudomonas, Quinones, Nucleotides, Terpenes, Tyrosine | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed | journal |
|---|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||||
| 22025 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100318 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100318) | ||||
| 31169 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27497 | 28776041 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | 33211880 | Nucleic Acids Res. 49: D498-D508 2020 | ||
| 89092 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397483.1 |