Strain identifier
BacDive ID: 130573
Type strain: 
Species: Pseudomonas balearica
Strain Designation: JJ
Strain history: <- J. A. Dijk, Univ. Wageningen
NCBI tax ID(s): 74829 (species)
version 8.1 (current version)
General
@ref: 22023
BacDive-ID: 130573
DSM-Number: 15012
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudomonas balearica JJ is a mesophilic bacterium that was isolated from subsoil from a site contaminated with chlorinated hydrocarbons.
NCBI tax id
- NCBI tax id: 74829
- Matching level: species
strain history
- @ref: 22023
- history: <- J. A. Dijk, Univ. Wageningen
doi: 10.13145/bacdive130573.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas balearica
- full scientific name: Pseudomonas balearica Bennasar et al. 1996
synonyms
- @ref: 20215
- synonym: Stutzerimonas balearica
@ref: 22023
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas balearica
full scientific name: Pseudomonas balearica Bennasar et al. 1996
strain designation: JJ
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 22023 | MINERAL MEDIUM (NAGEL AND ANDREESEN) (DSMZ Medium 461) | yes | https://mediadive.dsmz.de/medium/461 | Name: MINERAL MEDIUM (NAGEL AND ANDREESEN) (DSMZ Medium 461; with strain-specific modifications) Composition: Na2HPO4 x 2 H2O 1.44135 g/l KNO3 1.0 g/l MgSO4 x 7 H2O 0.497018 g/l NH4Cl 0.298211 g/l KH2PO4 0.248509 g/l NaCl 0.0497018 g/l MnSO4 0.00994036 g/l CaCl2 0.00994036 g/l HCl 0.00248509 g/l FeCl2 x 4 H2O 0.00149105 g/l p-Aminobenzoic acid 0.000248509 g/l Thiamine-HCl x 2 H2O 0.000248509 g/l alpha-lipoic acid 0.000248509 g/l Vitamin B12 0.000248509 g/l Pantothenic acid 0.000248509 g/l Riboflavin 0.000248509 g/l CoCl2 x 6 H2O 0.000188867 g/l Nicotine amide 0.000124254 g/l Nicotinic acid 0.000124254 g/l Folic acid 9.94036e-05 g/l Biotin 9.94036e-05 g/l MnCl2 x 4 H2O 9.94036e-05 g/l ZnCl2 6.95825e-05 g/l Pyridoxamine hydrochloride 4.97018e-05 g/l Na2MoO4 x 2 H2O 3.57853e-05 g/l NiCl2 x 6 H2O 2.38569e-05 g/l H3BO3 5.96421e-06 g/l CuCl2 x 2 H2O 1.98807e-06 g/l Distilled water |
| 22023 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
- @ref: 22023
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22023 | + | - | - | - | - | + | - | - | + | - | - | - | - | + | + | + | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 22023
- sample type: subsoil (20 m depth) from a site contaminated with chlorinated hydrocarbons
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_1195.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_64;98_944;99_1195&stattab=map
- Last taxonomy: Pseudomonas balearica subclade
- 16S sequence: AF411219
- Sequence Identity:
- Total samples: 942
- soil counts: 74
- aquatic counts: 344
- animal counts: 506
- plant counts: 18
Safety information
risk assessment
- @ref: 22023
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22023
- description: Pseudomonas stutzeri strain JJ 16S ribosomal RNA gene, partial sequence
- accession: AF411219
- length: 1498
- database: ena
- NCBI tax ID: 316
External links
@ref: 22023
culture collection no.: DSM 15012
straininfo link
- @ref: 89090
- straininfo: 399290
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22023 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15012 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15012) | |
| 68369 | Automatically annotated from API 20NE | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89090 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399290.1 |