Strain identifier

BacDive ID: 13057

Type strain: No

Species: Pseudomonas veronii

Strain Designation: 16-6A

Strain history: <- W. Reineke; 16-6A <- M. Göbel, Univ. Wuppertal

NCBI tax ID(s): 76761 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 6267

BacDive-ID: 13057

DSM-Number: 16273

keywords: Bacteria, mesophilic

description: Pseudomonas veronii 16-6A is a mesophilic bacterium that was isolated from ground water.

NCBI tax id

  • NCBI tax id: 76761
  • Matching level: species

strain history

  • @ref: 6267
  • history: <- W. Reineke; 16-6A <- M. Göbel, Univ. Wuppertal

doi: 10.13145/bacdive13057.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas veronii
  • full scientific name: Pseudomonas veronii Elomari et al. 1996

@ref: 6267

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas veronii

full scientific name: Pseudomonas veronii Elomari et al. 1996

strain designation: 16-6A

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6267NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
6267MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457)yeshttps://mediadive.dsmz.de/medium/457Name: MINERAL MEDIUM (BRUNNER) (DSMZ Medium 457) Composition: Na2HPO4 2.44 g/l KH2PO4 1.52 g/l (NH4)2SO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l CaCl2 x 2 H2O 0.05 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.002 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water

culture temp

  • @ref: 6267
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

compound production

  • @ref: 6267
  • compound: chlorocatechol 2,3-dioxygenase CbzE

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6267+-------++++++/-++-++-+

Isolation, sampling and environmental information

isolation

  • @ref: 6267
  • sample type: ground water
  • country: Netherlands
  • origin.country: NLD
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Groundwater

Safety information

risk assessment

  • @ref: 6267
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

External links

@ref: 6267

culture collection no.: DSM 16273

straininfo link

  • @ref: 82267
  • straininfo: 400469

literature

  • topic: Enzymology
  • Pubmed-ID: 15340793
  • title: Microorganisms degrading chlorobenzene via a meta-cleavage pathway harbor highly similar chlorocatechol 2,3-dioxygenase-encoding gene clusters.
  • authors: Gobel M, Kranz OH, Kaschabek SR, Schmidt E, Pieper DH, Reineke W
  • journal: Arch Microbiol
  • DOI: 10.1007/s00203-004-0681-5
  • year: 2004
  • mesh: Aldehyde Oxidoreductases/genetics, Amino Acid Sequence, Bacterial Proteins/genetics/metabolism, Biodegradation, Environmental, Catechol 2,3-Dioxygenase, Catechols/metabolism, Chlorobenzenes/*metabolism, Cloning, Molecular, DNA, Bacterial/chemistry/isolation & purification, Dioxygenases/chemistry/*genetics/isolation & purification/*metabolism, Environmental Microbiology, Ferredoxins/genetics, Genes, Bacterial, Molecular Sequence Data, Operon, Phylogeny, Pseudomonas/*enzymology/*genetics/isolation & purification/metabolism, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Synteny
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
6267Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16273)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16273
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
82267Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400469.1StrainInfo: A central database for resolving microbial strain identifiers